Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a04
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.17 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.51 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   4.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 34  NNIKNIKKEHDNGVNNLQNLHEETLHDIIKIRENEIENLRTLSIEAMKKADKLEKDNSLL 213
           + I++I+    NG+NNLQ LH         + +N I  L+    E +    +L   N+L+
Sbjct: 828 SGIESIQNRTFNGLNNLQILH---------LEDNRIRELKGFEFERLSHLRELYLQNNLI 878


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 419 IYFSKLTMIKGNWPSARI 472
           IY++ LTM+K NWP  R+
Sbjct: 211 IYYN-LTMVKLNWPKKRV 227


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 316 ELFVEVVCFFDYWI 275
           ELF+ +VCF  Y I
Sbjct: 416 ELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 316 ELFVEVVCFFDYWI 275
           ELF+ +VCF  Y I
Sbjct: 469 ELFIAIVCFVSYLI 482


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 635 VNSSDSNVLIFIWKASSLFNFI 570
           +N  D NVL+FI      FN +
Sbjct: 52  INMDDENVLLFIECTMKKFNVV 73


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 151 RTLSIEAMKKADKLEKDNSLLKHQEQ 228
           RT+   A ++ +K+ K+ +L+ H+E+
Sbjct: 563 RTMESVAAERLNKIGKNPNLVAHREE 588


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 151 RTLSIEAMKKADKLEKDNSLLKHQEQ 228
           RT+   A ++ +K+ K+ +L+ H+E+
Sbjct: 531 RTMESVAAERLNKIGKNPNLVAHREE 556


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 322 QTNVEA---FDVKPKTRIHGPCTCSLDVN 399
           Q+++EA   FD++P  + H P T +  +N
Sbjct: 240 QSHLEAHCYFDIEPTVQQHQPVTVNRQLN 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,924
Number of Sequences: 438
Number of extensions: 3135
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)