Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a01
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    30   0.32 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    29   0.55 
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.2  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 294 NIIQTIIESITNALPIKLSRRTTPPK-KESPMKIETLQKFAPELVPKNTVE 443
           + +Q I+E + +A PIK  R+T  P+ + +  + E  +    + V KNTV+
Sbjct: 93  DFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVK 143


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +3

Query: 366 PKKESPMK---IETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTE 536
           PKKE+ +    +  LQ+ +   + K   EI+ I    LE+V+ + ++ N+I+ T+V VT 
Sbjct: 283 PKKENIIPKYYLRYLQRLSRTEINK---EIIEIEKLELEVVQFQMSIANLIN-TQVEVTN 338

Query: 537 TI 542
           TI
Sbjct: 339 TI 340


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 RKYHKRVTHKVIKKD 358
           R YHK V+HK+++ D
Sbjct: 306 RSYHKEVSHKIVRID 320


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +3

Query: 372 KESPMKIETLQKFAPELVPKNTV------EIVSIPNQVLEIVEAEKAVDNVISMTEVSVT 533
           K S       Q  A EL+  +++         S+PN V   + A +A ++  S  +   +
Sbjct: 148 KNSSKSSRAAQSAAAELISSSSITGARPANSTSVPNAVNTEISAARATESEASRNQTKAS 207

Query: 534 ETIAKNSSFK 563
              ++ SSF+
Sbjct: 208 RDYSRASSFR 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,312
Number of Sequences: 5004
Number of extensions: 38993
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)