Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15a01
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical...    31   0.68 
AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical...    30   1.6  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    30   1.6  
U55373-8|AAD34666.1|  805|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U55373-7|AAC25890.2|  890|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical...    28   6.3  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    27   8.4  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF039046-13|AAB94213.1|  551|Caenorhabditis elegans Hypothetical
           protein R09B5.4 protein.
          Length = 551

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
 Frame = -1

Query: 616 FSIAFL--RTSLLTNGILGILKEEFFAIVSV 530
           FS AF   R S+ T+G+LG++ ++FFA+++V
Sbjct: 344 FSYAFFEKRYSVATSGLLGLVVQQFFAVLAV 374


>AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical
           protein Y102A5C.19 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +3

Query: 291 KNIIQTIIESITNALPIKLSRRTTPPKKESPMKI-ETLQKFAPELVPKNTVEIVSIPNQV 467
           + II   IES   +L  KL  +       +  ++ E LQKF PE+     +E +++  Q 
Sbjct: 125 RKIILKAIESFFESLNFKLKAKKVIIDDFTAREVSEILQKFEPEI-----LEEITLQAQF 179

Query: 468 LEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVN 587
           L+  E    ++ V+ + +    + +   S F IP   +VN
Sbjct: 180 LKYYE---PINGVVELEQWKKAKILNNRSKFLIPIKHIVN 216


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 291 KNIIQTIIESITNALPIKLSRRTTPPKKESPMKIETLQK-FAPELVPKNTVEIVSIPNQV 467
           + +++T++E      P    +   P +   P  +ET+Q+   PE+V +    +V    + 
Sbjct: 239 EQVVETVVEPQQAPEP---EQAPEPQQAPEPTVVETVQEEIVPEIVAETEAPVVVAETEA 295

Query: 468 LEIVEAEKAVDNVISMTEVSV 530
             +VE E  V  VI  TE  V
Sbjct: 296 PAVVETEAPV--VIEETEAPV 314


>U55373-8|AAD34666.1|  805|Caenorhabditis elegans Hypothetical
           protein F26F12.3b protein.
          Length = 805

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 450 SIPNQVLE-IVEAEKAVDNVISMTEVSVTETIAKNSS 557
           S+P Q++E ++ A+  +DNV+S+TE+     I ++ +
Sbjct: 26  SMPVQIVERVLTAKDTIDNVVSLTEIDKNGEIVRHET 62


>U55373-7|AAC25890.2|  890|Caenorhabditis elegans Hypothetical
           protein F26F12.3a protein.
          Length = 890

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 450 SIPNQVLE-IVEAEKAVDNVISMTEVSVTETIAKNSS 557
           S+P Q++E ++ A+  +DNV+S+TE+     I ++ +
Sbjct: 111 SMPVQIVERVLTAKDTIDNVVSLTEIDKNGEIVRHET 147


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/78 (21%), Positives = 42/78 (53%)
 Frame = +3

Query: 369 KKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAK 548
           KKE  +KIET++K   +++    +E+     ++ EI    +  + +  + E + T  I +
Sbjct: 159 KKEGALKIETVEKEKEKIIENRLIELDKYTEEMKEIARVHR--EQLQQIQERNRTLKI-E 215

Query: 549 NSSFKIPKMPLVNSEVLK 602
           N+  +  ++ + NS++++
Sbjct: 216 NAKQRREQLEIENSKIVQ 233


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 300 IQTIIESITNALPIKLSRRTTPPKKESPMKIETLQKFAPELVP 428
           + ++  + T+ALPIK+ ++   P +        ++K APE +P
Sbjct: 46  VPSLTRTKTSALPIKMEKKPMVPLRIEQDHQTPIRKLAPESIP 88


>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 509 NNVIHCFLCFYDF*NLIWYRNYFNSILWYQFRSKFL 402
           N+V HCF+CF+       YR     ++W++   K +
Sbjct: 322 NSVAHCFICFF---LSSQYRETVKDMIWFKKTKKLM 354


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +3

Query: 354 RTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVD--NVISMTEVS 527
           RT PPK E+P  +    +    + P+    +   P   + + E  K          TEVS
Sbjct: 577 RTEPPKTEAPRTVRPKTEAPMTVPPRTEPPMTEAPRTEVPMTEPPKTEPPRTAPPRTEVS 636

Query: 528 VT---ETIAKNSSFKIPKMPL 581
           +T   ET+  N+     ++P+
Sbjct: 637 MTLPPETVPPNTEAPRTEVPM 657


>U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical
           protein F25B5.5 protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 306 TIIESITNALPIKLSRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVE 482
           T++E + +A P    R T+P  K+ PM++  L    P L  +  +   S  ++ LE +E
Sbjct: 319 TLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERME 377


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +2

Query: 515 DRSFSNRNDRE---ELFLQNS*NA 577
           DR+FSN+ND E   ++FL NS NA
Sbjct: 444 DRTFSNKNDDELSDDVFLDNSMNA 467


>AF098995-11|AAC67488.2|  415|Caenorhabditis elegans Hypothetical
           protein F58E1.11 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
 Frame = +3

Query: 390 IETLQKF-APELVPKNTVEIVSIPNQVLEIVEAEKAV-----DNVISMTEVSVT 533
           ++ L+ F  P ++P  T++I S+P     IVE+ + +     D +I++T + VT
Sbjct: 259 LKALRPFLTPSVLPLKTLQICSVPEMPHPIVESAEELTLITKDRLITLTNLKVT 312


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +3

Query: 309 IIESITNALPIKLSRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVE 482
           I+E++ N  P  L R   PPK  S  K   ++K  P ++  N  + + + N ++  ++
Sbjct: 70  IVETLNNFKPSPLQRSIEPPKTPSINKPSLIKK--PSVILPNPPQNLVVSNLIVSYLQ 125


>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 456 PNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIE 614
           P Q L+IVEA ++V N++ +T   V +  A   +     M +  ++V K A +
Sbjct: 721 PAQKLQIVEAFQSVGNIVGVTGDGVNDAPALRKADIGIAMGITGTDVSKQAAD 773


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 456 PNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIE 614
           P Q L+IVEA ++V N++ +T   V +  A   +     M +  ++V K A +
Sbjct: 721 PAQKLQIVEAFQSVGNIVGVTGDGVNDAPALRKADIGIAMGITGTDVSKQAAD 773


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 498 DNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIE 614
           DN + +T++  + T+A++ SFK    P+V  EV + AI+
Sbjct: 65  DNYLGVTDMRNSTTVARSQSFKHRPKPMV--EVRRMAID 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,357
Number of Sequences: 27780
Number of extensions: 217237
Number of successful extensions: 705
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)