Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p15
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    30   2.1  
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535...    28   8.6  

>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 18  ITKYVSKRICWKLLSKNSKSMEFLRKL*ADSVAMDA*RNNIDVLSSGDIT*WILYSCSPP 197
           + +Y  + I WK   + S++ E      A  + ++A   +ID    G +  +I +SC P 
Sbjct: 183 VMEYCGEVISWKEAKRRSQAYENQGLTDAYIIYLNA-DESIDATKKGSLARFINHSCQPN 241

Query: 198 CDFCDFHWNAISVFR 242
           C+     WN +   R
Sbjct: 242 CE--TRKWNVLGEVR 254


>10_06_0182 -
           11552540-11552606,11552692-11552787,11553458-11553528,
           11553660-11553764,11554149-11554239,11554331-11554381,
           11554478-11554566,11554667-11554909,11555027-11555190,
           11555883-11555988,11556075-11556242,11557456-11557494,
           11557582-11557713
          Length = 473

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -1

Query: 184 EYKIHYVISPLDRTSMLFR*ASIATLSAYSFRKNSIDFEFLDNNFQQIRFETYFVMF 14
           +YK+H  + P   TSM  R     ++   S R+N I  E L+N      F+ +   F
Sbjct: 235 KYKLH--LPPYPGTSMCVRIGKAPSVDISSLRENYISPELLENQVMPDPFDQFVRWF 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,103,650
Number of Sequences: 37544
Number of extensions: 373472
Number of successful extensions: 862
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)