Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p13
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 64  FSVSYSFYRN*NHNNAKKVF 5
           ++ +Y+ Y N N+NN KK++
Sbjct: 334 YNNNYNNYNNNNYNNYKKLY 353


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 163 MLRFIRGKSKTC 128
           ++R +RGK KTC
Sbjct: 377 LMRTVRGKEKTC 388


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 163 MLRFIRGKSKTC 128
           ++R +RGK KTC
Sbjct: 377 LMRTVRGKEKTC 388


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 160 TFPTGFRCLVYNVKIMFRKT 219
           T P  FRCL  N KI  R T
Sbjct: 366 TLPITFRCLEENNKIDSRVT 385


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 301 PRYMLITHTLNLFTQHQING 242
           PRY L  +T+NL ++ +  G
Sbjct: 529 PRYCLFGNTVNLTSRTETTG 548


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 301 PRYMLITHTLNLFTQHQING 242
           PRY L  +T+NL ++ +  G
Sbjct: 529 PRYCLFGNTVNLTSRTETTG 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,694
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)