Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p11
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 29  NSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAERLSFIN 178
           ++ R  N  YT+ + D+   + Q P   L  +     +K EI  +  F+N
Sbjct: 23  HTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLN 72


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 493 ETPQARPSACLDLTNTYGTFLSS 425
           ++ +  P+  LDLT TY    SS
Sbjct: 176 DSKEEHPTCALDLTPTYAVVSSS 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 530 GLTTKASDPNYSARNRKTISLSINRRVRKLFCVEYNI 640
           GL++    P Y      T S +I+ + RKL  +E N+
Sbjct: 589 GLSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNV 625


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 GLTTKASDPNYSARNRKTISLS 595
           G+     DP YSAR  +  +LS
Sbjct: 168 GVLNNLHDPEYSARENELRALS 189


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 GLTTKASDPNYSARNRKTISLS 595
           G+     DP YSAR  +  +LS
Sbjct: 168 GVLNNLHDPEYSARENELRALS 189


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 GLTTKASDPNYSARNRKTISLS 595
           G+     DP YSAR  +  +LS
Sbjct: 168 GVLNNLHDPEYSARENELRALS 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,059
Number of Sequences: 438
Number of extensions: 3876
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)