Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p08
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit S16|...    59   5e-10
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.3  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.1  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.1  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.1  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   5.4  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   7.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.5  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   9.5  

>SPBC354.06 |mrps16||mitochondrial ribosomal protein subunit
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 96

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +3

Query: 129 IRLIRQGCTNRPFFHISVTHRRRLNSQPVIEQLGSYDPMP-------NINNEKLVALNLE 287
           IRL R G  NRPF+HI V +  +      IE +G++DP+P       +I   K + LN+E
Sbjct: 5   IRLARHGVRNRPFYHIVVANAWKAPQAKPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVE 64

Query: 288 RLKYWLGKGAHVSTPVSEL 344
           R KYW+  GA  S  V  L
Sbjct: 65  RFKYWISVGAQPSDTVRSL 83


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 PNTPRLHKSTILSHFCNP*ETFKQSASNR 220
           P+TP +   ++L HF  P E F  S + R
Sbjct: 81  PSTPAVPSKSVLFHFYEPDENFSLSDTGR 109


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 252 INNEKLVALNLERLKYWLGKGAHV 323
           IN+E++  +NL+ L  WL +  HV
Sbjct: 614 INHEEIDNMNLKSLHRWLSRSLHV 637


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 195 RLNSQPVIEQLGSYDPMPNINNEKLVALNLERLKYWLGKG 314
           R   Q V++QLG  DP    +++  +ALN +   ++ G G
Sbjct: 194 RYYPQAVVKQLGLSDPPSYADSDITIALNAD-ANFYFGSG 232


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 164 WSICATLAY*ANRLRCFSKISAGSTSRR*GHILNFVL 54
           WS+C  L Y  NR +  S    GS + +  H+L   L
Sbjct: 31  WSVCYHLIYILNRYQPISPNPRGSLNSKWYHLLQIPL 67


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 278 EFGTT*VLAWEGCSRIDPSFRTSWTLRIFPHTSSNLHDCLEK 403
           +FG    +A  G S +  S+ ++W +R+   T+ ++   L K
Sbjct: 233 KFGVLMAMAISGVSSVGISYTSAWCVRVTSSTTYSMVGALNK 274


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 186 HRRRLNSQPVIEQLGSYDPMPNINNEKLVALNLE 287
           HR R N +PVIE++  Y        ++L +L  E
Sbjct: 816 HRIRDNQRPVIEEIRIYREKIQTETQRLSSLQTE 849


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 204 SQPVIEQLGSYDPMPNIN 257
           S P+I+  GSY  MP+IN
Sbjct: 383 SSPLIQSPGSYVSMPSIN 400


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 267 LVALNLERLKYWLGKGAHVSTPVSELLGLSGFFPIHPRTYMTAWRNR 407
           L    L+ +  W   G  +   V EL  L  F  I+P    + W+++
Sbjct: 398 LACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQ 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,341
Number of Sequences: 5004
Number of extensions: 41607
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)