Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p08
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1263 - 25695622-25695856,25696608-25696653,25696882-25697014     72   3e-13
09_04_0615 + 18972227-18972250,18972293-18972397,18973492-189735...    70   1e-12
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178...    28   4.1  
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900...    28   4.1  
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    28   4.1  
09_06_0088 + 20774901-20775491,20776172-20776687                       27   7.2  
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    27   7.2  

>08_02_1263 - 25695622-25695856,25696608-25696653,25696882-25697014
          Length = 137

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 35/87 (40%), Positives = 45/87 (51%)
 Frame = +3

Query: 129 IRLIRQGCTNRPFFHISVTHRRRLNSQPVIEQLGSYDPMPNINNEKLVALNLERLKYWLG 308
           IRL R GC NRPF+ +     R       +E LG YDP+P  +  K + L  +R+KYWL 
Sbjct: 5   IRLARFGCRNRPFYRLMAADSRSPRDGKHLEVLGYYDPLPGKDGGKRMGLKFDRVKYWLS 64

Query: 309 KGAHVSTPVSELLGLSGFFPIHPRTYM 389
            GA  S PV  +L  +G  P  P   M
Sbjct: 65  VGAQPSDPVERILYRAGILPPPPMLAM 91


>09_04_0615 +
           18972227-18972250,18972293-18972397,18973492-18973584,
           18973887-18973993,18974107-18974157,18974675-18974928,
           18975176-18975221,18975896-18976127
          Length = 303

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 34/87 (39%), Positives = 45/87 (51%)
 Frame = +3

Query: 129 IRLIRQGCTNRPFFHISVTHRRRLNSQPVIEQLGSYDPMPNINNEKLVALNLERLKYWLG 308
           IRL R GC NRPF+ +     R       +E LG Y+P+P  +  K + L  +R+KYWL 
Sbjct: 172 IRLARFGCRNRPFYRVMAADSRSPRDGKHLEVLGYYNPLPGKDGGKRMGLKFDRVKYWLS 231

Query: 309 KGAHVSTPVSELLGLSGFFPIHPRTYM 389
            GA  S PV  +L  +G  P  P   M
Sbjct: 232 VGAQPSDPVQRILFRAGLLPPPPMLAM 258


>10_08_0793 -
           20614583-20614897,20615417-20615660,20617713-20617899,
           20618508-20618547,20618699-20618775,20618965-20619091
          Length = 329

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 312 GAHVSTP--VSELLGLSGFFPIHPRTYMTAWRNRQQERENLAKQEAENAKEQTAA 470
           G H +TP  V +L+G+ G    H ++++  +RN + +   +   +  + +EQT A
Sbjct: 40  GQHKATPKRVLQLMGVGGLTISHVKSHLQMYRNMRNDDLGMQGIQQMDDQEQTFA 94


>10_05_0085 -
           9005539-9005922,9006207-9006463,9006707-9006883,
           9007349-9007490,9007814-9007904,9009024-9010942
          Length = 989

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 411 VVYFSRQS-CRFEDVWGKILRVQEVLKLGSIREHPS 307
           V Y S+ +   FED+    + ++E+LKLG+IRE  S
Sbjct: 665 VPYISKPNRSNFEDIEEFKMHIEELLKLGAIRESRS 700


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 111 AKAAKSIRLIRQGCTNRPFFHISVTHRRRLNSQPVI 218
           A+    +  +R+G  N  FFH   T RRR N   V+
Sbjct: 61  ARQRSRVDWLREGDRNTAFFHARATARRRTNKITVL 96


>09_06_0088 + 20774901-20775491,20776172-20776687
          Length = 368

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 129 IRLIRQGCTNRPFFHISVTHRRRLNSQPVIEQLG 230
           +R ++   T   FF++ +  RRR  + PV++Q G
Sbjct: 69  LRYLKHSGTASQFFYLKINARRRKKTIPVLQQGG 102


>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 338 RTSWTLRIFPHTSSN--LHDCL--EK*TTRKGEPSQTRSRKCQRTNCCNI 475
           RT  TLR++PH  S   L +C   EK  +         + KC  TN C I
Sbjct: 605 RTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKI 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,857,853
Number of Sequences: 37544
Number of extensions: 253664
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)