Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p05
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.88 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.88 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 289 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 182
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 289 FAVPSRHFLLGLA-----KSARALLSNSTYCWRFSIQSTLR 182
           F  P +HF +GLA         +L+ N    W FS   +LR
Sbjct: 49  FPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLR 89


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 283 RRRLPSRIFSWIRDSRTISRREPANKTNM 369
           R  LP  I SW++D R +   E  + TNM
Sbjct: 636 RGDLPLSI-SWLKDGRAMGPSERVHVTNM 663


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +3

Query: 72  YLMKIPKVYQSCNLSNVPFRNNQIAYKAYSVELEKSLRNVDWMLNLQQYVELESKARADF 251
           YL   P++Y S      P +++Q  +   SVE +  +      +  Q+Y ++E     + 
Sbjct: 140 YLTPSPQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEP 199

Query: 252 ANPNKKW 272
           ++  K +
Sbjct: 200 SSSTKSY 206


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 564 VIPAEAYTYEAAMIDVLGINNIKNLK 641
           VIP ++ TY+     V+ +   + LK
Sbjct: 656 VIPEQSLTYQDQQYQVVSVEQYQQLK 681


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 323  THAQSPGESQQTKPT 367
            T +QSPG  QQT  T
Sbjct: 1283 TSSQSPGNQQQTIQT 1297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,792
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)