Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14p04
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 38 0.001
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 34 0.023
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 32 0.094
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 31 0.12
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.29
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 30 0.29
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 1.5
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 27 2.0
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 27 2.0
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.7
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 25 8.2
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 37.9 bits (84), Expect = 0.001
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Frame = +1
Query: 223 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS---QLTSKVIVAVGIDLPE 393
G+ A ++ IK I+ +GF G Y+GLSA +LG+ ++ L K AV I
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLR 255
Query: 394 INDPPNIVTDDEPKVEDY-IKLGRRDMIMQTVAVVIAHPFHVVSVRMMAS-FIGKEEHYS 567
+ I KV D+ KLG I + +A IA+P VV R+ S I Y+
Sbjct: 256 RKE-LGIQETIYDKVLDWGGKLGGAG-IAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYT 313
Query: 568 SLLGAIVSIYKDDGILGFLHGLIPKVL 648
L+ ++ + GI+G GL +L
Sbjct: 314 GLIQCFKLVWMEQGIVGLYGGLTAHLL 340
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 33.9 bits (74), Expect = 0.023
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 505 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKV 645
P V V M + G + ++ I+SIYK++GI G G +P++
Sbjct: 224 PLEVARVEMQSLTKGIQHSSPGIMQTIMSIYKNNGIKGLYRGAVPRM 270
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 496 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 639
+ P V V+M A+ ++ AI +I GILGF GLIP
Sbjct: 28 LGQPLEVTKVQMAAN------RTQTMAQAIKAIMSRGGILGFYQGLIP 69
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 31.9 bits (69), Expect = 0.094
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 481 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSL-LGAIVSIYKDDGILGFLHGLIPKVLG 651
+VA + +P + R+ S + + +H S+ L +YK GI G+ G++ +LG
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSRGQHGKSIILSNAKELYKSVGIRGYYRGVLVGILG 297
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 484 VAVVIAHPFHVVSVRMMASFI-GKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 660
+ + P V+ R + I G +Y ++ AI IYK +GI GF G +L +
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIP 298
Query: 661 CLAVT 675
+++T
Sbjct: 299 VMSIT 303
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 526 RMMASF-IGKEEHYSSLLGAIVSIYKDDGILGFLHG 630
RM F + + Y+SL +V I+ +G++GF G
Sbjct: 43 RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRG 78
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.3 bits (65), Expect = 0.29
Identities = 34/140 (24%), Positives = 53/140 (37%)
Frame = +1
Query: 226 RPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDP 405
RP L Q + I +G G YRGL+A + A S + ++ L + P
Sbjct: 138 RPNPRLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSL-QSRLP 196
Query: 406 PNIVTDDEPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI 585
P D++ +G + + V P V RM + KE Y + +
Sbjct: 197 P----DEKLSTVTTFLVG---SVAGIITVYCTQPIDTVKSRMQSLSASKE--YKNSIHCA 247
Query: 586 VSIYKDDGILGFLHGLIPKV 645
I DG+L F G P++
Sbjct: 248 YKILTQDGLLRFWSGATPRL 267
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 496 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGL 633
+++PF V +M I K + + L + + YK+ G+ GF GL
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGFFVGL 298
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 223 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 336
G+ M+L ++ I ++G G YRG+ MLG +
Sbjct: 45 GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 448 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 555
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 448 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 555
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 640 KVLGDLTCLAVTGVLAYYVNKYF 708
++ D+TC V L Y+VNK+F
Sbjct: 66 EIANDVTCGRVETALLYFVNKFF 88
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 14 RCFWFANFNFRKQKCLIETVKIWTKLRKK 100
RC W + +K ++E K WTK+ +K
Sbjct: 313 RCVWSKEEDEELRKNVVEHGKCWTKIGRK 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,006
Number of Sequences: 5004
Number of extensions: 66752
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -