Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p04
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.002
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.002
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 427 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 600
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 601 DDGILGFLHGLIPKVL 648
            +G   F  G    +L
Sbjct: 266 TEGGNAFFKGAFSNIL 281



 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 487 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 651
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G   G    V G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQG 185


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 427 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 600
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 601 DDGILGFLHGLIPKVL 648
            +G   F  G    +L
Sbjct: 266 TEGGNAFFKGAFSNIL 281



 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 487 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 651
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G   G    V G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQG 185


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 543 YWERRTLQLAVG 578
           +WERRTLQ++ G
Sbjct: 187 FWERRTLQISDG 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 543 YWERRTLQLAVG 578
           +WERRTLQ++ G
Sbjct: 240 FWERRTLQISDG 251


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 160 AKVLIQLGYEP 192
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,493
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)