Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14p03
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...   175   4e-45
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    31   0.18 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.43 
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    29   0.74 
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    29   0.74 
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    27   3.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.9  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   9.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   9.1  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score =  175 bits (426), Expect = 4e-45
 Identities = 92/214 (42%), Positives = 134/214 (62%), Gaps = 16/214 (7%)
 Frame = +3

Query: 6    QVRGCLLTYLERLDDEFTKLLKECDPHSNEYVERLKDEVRVSALIDRVCQVVERDGTPQE 185
            QV+G ++++LERLDDEFT+ L+  DPH+ EY++RLKDE  +  L+ R    +ER G  + 
Sbjct: 446  QVQGSVVSFLERLDDEFTRSLQMIDPHTPEYIDRLKDETSLYTLLVRSQGYLERIGVVEN 505

Query: 186  ICRAYLRKIDHLYYK------FDPRAVRKDLPPTEETTIKK----------MERYCKYIY 317
              R  +R++D +YYK       +     +  PPT + TI            +   C Y+Y
Sbjct: 506  TARLIMRRLDRVYYKPEQVIRANEEVAWRSFPPTFDLTITPRATTTTPDILIHSLCVYLY 565

Query: 318  AHDETDRLRTRAILSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANL 497
             ++    LRTRA+L HIYH AL + +++ARD+LLMSHLQ++V  +D +TQIL+NRTM  +
Sbjct: 566  -NNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQDSVHAADIATQILHNRTMVQI 624

Query: 498  GLCAFRRGNVKEAHGCLAELMMTGKPKELLAQGL 599
            GLCAFR G V+E    L ++  TG+ KELL QG+
Sbjct: 625  GLCAFRNGMVQETQYALQDISTTGRVKELLGQGI 658


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +3

Query: 33  LERLDDEFT------KLLKECDPHSNEYVERLKDEVRVSALIDRVCQVVERDGTPQEICR 194
           L R++DE T       + KE D  S   ++ +  E R++ L D+   +  +   P+EIC+
Sbjct: 476 LRRIEDEITLTKMWISIAKESDAMSGHNIKSV--ETRLAKLYDQRSLITAKVN-PEEICK 532

Query: 195 AYLRKIDHLYYKF 233
            +   I H+   F
Sbjct: 533 TFQNSISHIVSSF 545


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 363  HIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKE 533
            ++ ++  +DN F   DLL++  L   + + DP+  +  NR  + L    F +G VK+
Sbjct: 912  YLKNYNFNDNQFLFMDLLIIFPLSAAMSYFDPAQNLTSNRPNSTL----FGKGRVKD 964


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 153 QVVERDGTPQEICRAYLRKIDHLYYKFDPRAVRKDLPPTEETTIKKMERY 302
           QVV  D   + +C  Y+  + H     DP   +K + P     I K+  Y
Sbjct: 114 QVVSPDKDVEGLCHKYVMNMYHNIRHLDPEKTKKSILPCTPLAIVKILEY 163


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 138 IDRVCQVVERDGTPQEICRAYLRKIDHLYYKFDPRAVRKDLPPTEETTIKKMERYCKYIY 317
           ++R+C +   D    ++     + ++ L+ K+D   + K+        I+K ERY    +
Sbjct: 5   LERLCFIGGYDNDNDKVIVVVTKNLE-LFKKYDDINLIKEAYNHVHKLIQKDERYTAVFF 63

Query: 318 AHDET 332
           AHD T
Sbjct: 64  AHDST 68


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 252 KDLPPTEETTIKKMERYCKYIYAHDETD 335
           KD+PP          R C  I +HDETD
Sbjct: 42  KDVPPNLPRQPDSWLRLCSNIESHDETD 69


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +3

Query: 222 YYKFDP-----RAVRKDLPPTEETTIKKMERYCKYIYAHDETDRLRTRAILSH 365
           YY  DP     R V+ + PP         + +    +  D   R++TR +L H
Sbjct: 204 YYDLDPTSALFRMVKDEHPPLPSNISSAAKSFLMQCFQKDPNLRIKTRKLLKH 256


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 24   LTYLERLDDEFTKLLKECDPHSNEYVERLKD-----EVRVSALIDRVCQVVERDGTPQEI 188
            L  L  L+D    L KEC   SN  VE L+D     + R + L D V + V++     + 
Sbjct: 1645 LRTLRSLEDSVASLQKECKIKSNT-VESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDR 1703

Query: 189  CRAYLRKIDHLYYKFD 236
            C     K+  L+ + +
Sbjct: 1704 CEHLSGKLKKLHSQLE 1719


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 247  FEKIFRLLRKQLLRKW-NVTANTFMPMMRPIV*ELVLYFLISITMPCMTTGSKPVICYSC 423
            F ++++ +R+Q    + N  +   + + + ++ +L  ++LI         G    +C+SC
Sbjct: 891  FPELYKEMREQKCFSYKNFISCVLISVYQGLIIQLFTFYLIGFE----EEGKMLAVCFSC 946

Query: 424  LIFKRPYNTLILV 462
            LIF    N LI+V
Sbjct: 947  LIF----NELIMV 955


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 357 LSHIYHHALHDNW 395
           LS ++HHAL+D W
Sbjct: 919 LSIVWHHALYDGW 931


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 477 NRTMANLGLCAFRRGNVKEAHGCLAELMMTGKPKEL 584
           N    NLG      GN KE+    AEL    KP E+
Sbjct: 206 NSASHNLGSTKSPNGNAKESLSRSAELPSKAKPMEI 241


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 200 IRPTNFLRCTITFNNLTYTVNES 132
           IRPTN L   +  NN+ Y +N+S
Sbjct: 10  IRPTNQLEQDLGGNNVIYPLNDS 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,844
Number of Sequences: 5004
Number of extensions: 52876
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)