Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o24
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880...    28   2.0  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    28   2.0  
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932...    28   2.6  
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088...    28   2.6  
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024...    27   4.5  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    27   6.0  
04_03_0142 + 11773124-11774158                                         26   7.9  

>03_05_0825 -
           27986393-27986767,27987541-27987625,27987936-27988036,
           27988144-27988227,27988868-27988939,27989203-27989319,
           27989386-27989526,27989951-27990122,27990324-27990372,
           27990773-27990821,27991240-27991270,27991301-27991371
          Length = 448

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 97  PKEDNSLNTLAESAKKTIEELREKVE 174
           PKE ++  T+A + +KT EE+R +++
Sbjct: 91  PKESSTATTMAAATEKTAEEIRRELQ 116


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 130 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 264
           E A+K  E L+  +K   +L PE +K+ F +++ +F +F   L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305


>06_03_1085 +
           27491735-27492754,27492854-27492978,27493088-27493232,
           27493328-27493591
          Length = 517

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 100 KEDNSLNTLAESAKKTIEELREKVESAL 183
           +E N L+ L +  +K + ELR KVE A+
Sbjct: 49  EESNFLDDLKDGERKALAELRAKVEEAI 76


>05_03_0511 +
           14907475-14907933,14907948-14908178,14908520-14908855,
           14909571-14910126,14910217-14910424,14910519-14910885,
           14910988-14911110
          Length = 759

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 151 EELREKVESALAPETVKKNFGTMVDSFNEFYKNLKP 258
           EELR  V       T    FGT++DS+N   + LKP
Sbjct: 633 EELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLKP 668


>05_07_0224 +
           28500745-28500978,28501933-28502332,28502416-28502480,
           28502633-28502692,28502865-28503014,28503386-28503541,
           28503648-28503785,28503874-28503947,28504172-28504273,
           28505415-28505604,28505756-28505830
          Length = 547

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 91  DAPKEDNSLNTLAESAKKTIEELREKV 171
           + PK+D   ++L ES  +T +E+ EKV
Sbjct: 516 EKPKQDRDEDSLTESMDETADEVSEKV 542


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 294 VSKYITPKYIECNNVLDIIE 353
           + KY+ PKY+   NV+DI++
Sbjct: 666 IVKYLRPKYVLMENVVDILK 685


>04_03_0142 + 11773124-11774158
          Length = 344

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  SCWLSASPMCMHSSNEMLLKKTIA*IRWLRVRRKQLR 154
           S WL   P+C   S EMLL++  A   + +   ++LR
Sbjct: 300 SFWLFFPPICREGSEEMLLEEWAAVAAFFQDAGRKLR 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,371
Number of Sequences: 37544
Number of extensions: 165444
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)