Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o21
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 437 YLGSKRYVHNFPCQAFAHSVQSIMNVVLTESNQTTY 330
           +  S + + N   QAFAHS Q I++  L    +  Y
Sbjct: 10  FANSVKELRNLAQQAFAHSNQLIIDKSLKGWKEVEY 45


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 506 KISLRRHVR*AHSEKLRYYSYAI 574
           K SL+RHV   H+E+   Y   I
Sbjct: 18  KASLKRHVADKHAERQEEYRCVI 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 158 NKKLDFDSQSF*VLPIKLN 214
           +KKLD DS     LPI+L+
Sbjct: 327 DKKLDLDSIDMMQLPIQLD 345


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 555 LSFSEWAYLTCLLKDILCSTR 493
           +  ++W +L   L+D+ CS R
Sbjct: 65  IGINKWRFLLQCLEDLDCSLR 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 362 RS**TGHCGRRP 397
           RS  +G+CGRRP
Sbjct: 40  RSESSGYCGRRP 51


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 362 RS**TGHCGRRP 397
           RS  +G+CGRRP
Sbjct: 40  RSESSGYCGRRP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,695
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)