Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o19
         (139 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    30   0.26 
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    30   0.26 
Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.      27   1.4  
AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinas...    27   1.4  
Z81044-7|CAB02805.1|  199|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    25   9.7  

>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
 Frame = +2

Query: 77  RMNPDMDD-----DEKGKLFVGGLSW 139
           R+N D DD      + GK+F+GGLSW
Sbjct: 29  RLNADSDDGSHGSQDPGKMFIGGLSW 54


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
 Frame = +2

Query: 77  RMNPDMDD-----DEKGKLFVGGLSW 139
           R+N D DD      + GK+F+GGLSW
Sbjct: 29  RLNADSDDGSHGSQDPGKMFIGGLSW 54


>Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical
           protein F52F12.3 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 41  PVKTPKPHKHRPT 3
           P +TP PH HRPT
Sbjct: 325 PAETPPPHAHRPT 337


>AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 41  PVKTPKPHKHRPT 3
           P +TP PH HRPT
Sbjct: 325 PAETPPPHAHRPT 337


>AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinase
           MOM-4 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 41  PVKTPKPHKHRPT 3
           P +TP PH HRPT
Sbjct: 325 PAETPPPHAHRPT 337


>Z81044-7|CAB02805.1|  199|Caenorhabditis elegans Hypothetical
           protein C30H6.9 protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 100 IVHVWIHTHTLLXIKNKGWHR 38
           ++ +WI TH +L  K +  HR
Sbjct: 53  LMFIWISTHGILLYKRRSEHR 73


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 3   CGSVLVWFGCLYRCQPLFLIXSKV 74
           C   +VW G    C P F + S +
Sbjct: 178 CTVAIVWIGSFLICSPSFFLASSI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,127
Number of Sequences: 27780
Number of extensions: 44379
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)