Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o19
         (139 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   7.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    18   9.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    18   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    18   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    18   9.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  RLAPVKTPKPHKHRPT 3
           R+ P +T   HK +PT
Sbjct: 164 RVDPFRTGFEHKRQPT 179


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 50  RLAPVKTPKPHKHRPT 3
           R+ P +T   HK +PT
Sbjct: 164 RVDPFRTGFEHKRQPT 179


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 92  CLDSYAYLTXN*K*RL 45
           CLD Y Y   + K RL
Sbjct: 322 CLDPYVYAISHPKYRL 337


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 48  VGTGKDTQTTQAQ 10
           +GTGK     QAQ
Sbjct: 169 IGTGKTATPQQAQ 181


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  PDMDDDEKGKLFVGG 130
           P + DDE  ++ +GG
Sbjct: 272 PSLIDDEPTEVTIGG 286


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  PDMDDDEKGKLFVGG 130
           P + DDE  ++ +GG
Sbjct: 272 PSLIDDEPTEVTIGG 286


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 86  PDMDDDEKGKLFVGG 130
           P + DDE  ++ +GG
Sbjct: 272 PSLIDDEPTEVTIGG 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,931
Number of Sequences: 438
Number of extensions: 485
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)