Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o18
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    31   0.062
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.44 
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   1.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   9.5  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    24   9.5  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    24   9.5  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    24   9.5  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 31.5 bits (68), Expect = 0.062
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 183 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQY 94
           +L P C    R +FW C F + R  + AQY
Sbjct: 63  VLNPYCHVDLRARFWICPFCFQRNPLPAQY 92


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 183 LLPPRCLPSFRVQFWFCHFFYSRTCIAAQYIAVCN 79
           +L P C    R +FW C F   R  +  QY  + N
Sbjct: 63  VLNPYCHIDTRAKFWICPFCLQRNMLPPQYKDISN 97


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 165 LPSFRVQFWFCHFFYSRTCIAAQYI 91
           + S  +  WFC FF+   CI+A YI
Sbjct: 304 IQSIHLGLWFC-FFFLTACISALYI 327


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 288 AKRSAVRNRRGLISGRENSQQTLLRFTPQ*PHTIN-LLPPRCLPSFRVQFWFCHFFY 121
           A +S  R  R L   + +S + L+ F      T N +LPP+ LP + V    C++F+
Sbjct: 168 AIKSTRRCYRSLFCKKMDSLKKLVSFLLT--ETENAILPPKSLPLYGVIISTCYYFH 222


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 87  VCN*YTSNFNN 55
           VCN YT NFNN
Sbjct: 811 VCNRYTHNFNN 821


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 369 LTCLKLAR*SLILYPLLAHVKCKQRRVAKRSAVRNRRGLIS 247
           + CL      L+ + L  ++K   R++AKR A  N   ++S
Sbjct: 18  IPCLAYVVNFLVCFVLFTNIKLDVRKMAKRHAEENEDTVMS 58


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 177 PPRCLPSFRVQFWFCHFFY 121
           P + +PSF +  WF ++ Y
Sbjct: 50  PGKVIPSFGIHPWFSYYLY 68


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 206 GVNLSRVCCEFSRPEIS 256
           G NLS VC ++  PE+S
Sbjct: 221 GPNLSSVCVQYPMPELS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,928
Number of Sequences: 5004
Number of extensions: 32555
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)