Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o16
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    29   0.41 
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.8  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   5.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   5.1  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   6.7  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   8.9  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 249 TCEMEGATFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKG--VFETVDGVSIMDV 422
           TC  EG    +        AV ++   S PF  I++   +Q A G  +  ++  V + DV
Sbjct: 72  TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131

Query: 423 YNKWK-PGEPNDSHNNE 470
            ++ K   + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 159  FFRKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQ 335
            F   D   +   E   +I T +K W +  K+      + FF P+D  E +     +    
Sbjct: 840  FSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWY 898

Query: 336  PFEWISIGISSQMAKGVFETVDGVS 410
            P      G  S + KG+ ET D +S
Sbjct: 899  PNRARDPGTLSHLVKGLKETADHLS 923


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 150 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 245
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 196 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 345
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 558 ASLEWNVNCDIPNTDYAY 611
           +S++W+ N  + NTDY Y
Sbjct: 187 SSMDWSCNMTLCNTDYPY 204


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 441  PASICYTRPLWRHHQQFRRLLWPSAMRSRY 352
            P SICY + LWR ++   +L++ +   + Y
Sbjct: 946  PGSICYNQRLWRRNRN-EKLIYRTRPLAEY 974


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 210 FCKSSQLIRYTYSPYGKTYFPVVH 139
           FCK S+  R TY    K Y+  +H
Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIH 494


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 RNSFMDNGKISFSVRTIRISNQLR 198
           +NS  DNG +  +V TI + N LR
Sbjct: 84  KNSDTDNGLLKSAVETITLENGLR 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,741
Number of Sequences: 5004
Number of extensions: 55563
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)