Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o16
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    28   6.9  
08_02_0593 + 19078264-19078609,19078724-19082256                       27   9.2  

>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
            4329925-4331469,4332220-4332429,4332563-4332713,
            4332791-4333031,4333898-4333956,4334379-4334653,
            4334813-4334955,4335034-4335088,4335181-4335258,
            4335351-4335478,4335533-4335575
          Length = 1173

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 299  IRCCDHLLEHVTTLRMDQYRDLIADGQ 379
            IRC  H   HV  L M   RD++  GQ
Sbjct: 1079 IRCLSHPSAHVRALSMSVLRDILNSGQ 1105


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +3

Query: 462 NNEDCVVIHRNDGLMNDDDCAK------SFPFICKKTLASLE 569
           N   CV +HR  G  N DD +K       F FIC+  L ++E
Sbjct: 761 NVPSCVQLHRQHGSGNADDRSKIRMLCRRFQFICRALLHAVE 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,501
Number of Sequences: 37544
Number of extensions: 328383
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)