Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o14
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.31 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  FEKPLPHLSLPDWDARLYG 136
           FE+PLP L LP  D  L+G
Sbjct: 471 FEEPLPSLPLPGADDDLFG 489


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 473 ELKKELCVTESNKKMLIDRCQSAWEKINK 559
           E+   LC+TE   K+     +  W+K NK
Sbjct: 302 EIAHALCLTERQIKIWFQNRRMKWKKENK 330


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 473 ELKKELCVTESNKKMLIDRCQSAWEKINKL 562
           E+   LC+TE   K+     +  W+K +K+
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKKEHKM 69


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 473 ELKKELCVTESNKKMLIDRCQSAWEKIN 556
           E+   LC+TE   K+     +  W+K N
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKKEN 67


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 343 QTSHFAVNAVKQFLERGLPLFNFVNPCT*SVIVV 242
           +T+ FAV  +   LER + L      C   V++V
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIV 279


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 256 SVIVVVAVPFGLDPRLISELMGTVPQVKSVCSSCIGSHLQTV 131
           +++V+ A    ++   I EL   +  V+ +C +  G   QTV
Sbjct: 3   TIVVIFAFCICVNAMTIEELKIQLHDVQEICKTESGIDQQTV 44


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 256 SVIVVVAVPFGLDPRLISELMGTVPQVKSVCSSCIGSHLQTV 131
           +++V+ A    ++   I EL   +  V+ +C +  G   QTV
Sbjct: 3   TIVVIFAFCICVNAMTIEELKIQLRDVQEICKAESGIDQQTV 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,783
Number of Sequences: 438
Number of extensions: 3184
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)