Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14o11
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 35 0.008
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.1
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.1
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 5.1
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 6.7
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 25 6.7
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 25 6.7
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po... 25 6.7
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.9
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 488 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGAR 592
Q+L +R L+ AG +IGKAG + ELR T +
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVK 126
Score = 34.7 bits (76), Expect = 0.011
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 530 GCVIGKAGSKIKELREKTGARLKI 601
GC+IG+ GSKI E+R +G+++ I
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISI 356
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 400 FSCYGEYPFGAGAIWDCYRGF 338
F CY E P G AI C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 82 LNVYCLCFSALVSFKRSI 135
L VYC F LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = -1
Query: 165 SSYDYPGSH---LY*SFERH*STKA 100
SSY YP SH Y SF+RH S+ +
Sbjct: 158 SSYSYPSSHQDPAYSSFKRHRSSNS 182
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 536 VIGKAGSKIKELREKTGARLKI 601
VIGK GS + LRE G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 292 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 387
N + +Y +KP+Q+ S RL +PRT +
Sbjct: 88 NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 277 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 366
GG +D + W Q +A+ Q Y R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 6.7
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -3
Query: 391 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 230
YG P G GA W C A E A F R H+ R+ F CLP P
Sbjct: 55 YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102
>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 264 RKVTSSSVCRCRFWAGPSSPYASRFILMPNKVQSSYDYPG 145
+ V S + + W+ PS+P A ++ + +SY Y G
Sbjct: 38 KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 541 WESWFENQRVT*ENRCAPEDIFELRAP 621
W +W + + E CAP ELR P
Sbjct: 300 WYNWITQRVNSGEGPCAPPSYAELRGP 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,953
Number of Sequences: 5004
Number of extensions: 48102
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -