Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o09
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    28   5.7  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    27   9.9  

>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 206 LVY-CCF*DSLQPVKNILYINVSSPAPRTTPAAIGTQLFPSLSLIIT 69
           ++Y CCF     P+ N+L   +  P+ R    +I T  F  +S+I+T
Sbjct: 605 IIYVCCFVMGFGPIPNVLCSELFPPSCRNRCMSICTLTFWIVSIIVT 651


>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
            23053006-23053090,23053281-23053367,23053585-23053657,
            23053882-23053925,23054041-23054169,23054301-23054402,
            23054529-23054585
          Length = 1387

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -2

Query: 264  TRSGASFLASALKRDSYLLVGVLLFLRFSAAGEEHLIYQC*QSSSQDNACCDRHPVISIP 85
            +++G + L SA+K + Y L    LFL   A  + HL  Q   +  QD       PV+  P
Sbjct: 1212 SQNGVAHLFSAIKENGYQL----LFLSARAISQAHLTRQFLFNLKQDGKALPDGPVVISP 1267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,390
Number of Sequences: 37544
Number of extensions: 339206
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)