Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o06
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    31   0.088
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    28   0.82 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.4  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.4  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.8  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   5.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   7.6  

>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 31.5 bits (68), Expect = 0.088
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 174 YFSVSYLIASFDNLEIILRCHALG*SHLYQYVSTTLT*NSHQIFWPFSYI-NWHMTDKT 1
           +F+V+ L  +FDN EI     ALG   +Y YV T    ++    WP   + +W+++  T
Sbjct: 123 FFTVNGLTGTFDNYEIYASLMALG---VYPYVPTLTGFSTFLGVWPTGTMRDWYLSQTT 178


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 338 RTFKGAA*TNCIQKKSRQTITMDLNRRMK--RNQRPIQEQI 454
           R FK    +NC+  KS   IT  L+RR+K  +  R +QEQ+
Sbjct: 161 RLFKSPI-SNCLNPKSDPEITQLLSRRLKLEKEVRNLQEQL 200


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 196 YTFCSDKLLFSFIFDSFIRQFGD 128
           Y+F SD + +SF  DSFI++  D
Sbjct: 722 YSFLSDLVQYSFQPDSFIKEAAD 744


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 225 IRPSCNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHELI-VSKKKVAK 392
           ++ S    DS +N P    +N + +  E+D +D+PI   R+ +   +   S KK AK
Sbjct: 27  MKESDEESDSSENHPLSESLNKKSKS-ESDEDDIPIRKRRASSKKNMSNSSSKKRAK 82


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 365 NCIQKKSRQTITMDLNRRMKRNQR 436
           + + ++SRQ + ++LN+ +K NQR
Sbjct: 674 DALDEESRQALDVELNKLLKWNQR 697


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 556 QRAISSLLI*VYLGCQNQGNYFLHFLLNCLCSQIDLFLNWPLVPFHSSV 410
           +R +SSLL    +        ++H  L CLC  ++  L + L P  SSV
Sbjct: 278 KRMLSSLLRYASIAFSESFQGWIH--LKCLCVYVESILRYGLPPDFSSV 324


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 RDSGQNKPSFNFVNNEQEDKEADCEDVPILV-ERSKALHEL 365
           RD   N  +  F+NNE+E+ E +  +V + +  R+  L  L
Sbjct: 459 RDLNLNFENSEFLNNEEENDEDELSNVLVSIPSRTSVLERL 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,989
Number of Sequences: 5004
Number of extensions: 42016
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)