Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o06
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm rece...    28   5.3  

>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 186 QNVYLTYVCLISDIRPS-CNTRDSGQNKPSFNFVNNEQEDKEADCEDVPILVERSKALHE 362
           QN  L Y C+I  +RP    TR S  ++      N +  D   D  DV I ++R+  L E
Sbjct: 496 QNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPD--DVKIALQRTHVLVE 553

Query: 363 LI 368
           L+
Sbjct: 554 LV 555


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -2

Query: 520 LGCQNQGNYFLHFLLNCLCSQIDLFLNWPLVPFHSSV*VHCYRLATFFLDTISSCSAFER 341
           L  Q    +  +F++ C    + +   W L P H+++    YR +    +T +S +  E+
Sbjct: 284 LNAQENAYFVCNFIITCEMLLLSVLATWLLAPRHNAM-FDAYRPSMALSETTASLNETEQ 342

Query: 340 S 338
           S
Sbjct: 343 S 343


>AC024750-5|AAF60441.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 172 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 494 FSSFSIKLLVLSDRFVLELAAGSVSFFCLSPLLSFGDFFFGYN*FMQ 354
           F  FS+ L+V+   F + + AG  S+F +  LL  G+  +  N  MQ
Sbjct: 204 FIGFSLFLVVMLIPFAIVIYAGIKSYFIIRALLKQGETRYAKNLQMQ 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,098
Number of Sequences: 27780
Number of extensions: 228260
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)