Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14o05
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 30 0.26
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 30 0.34
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 28 1.4
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 28 1.4
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 27 2.4
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 27 3.2
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.4
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 25 7.4
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.8
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 448 PGRSIPVRRQYPQRPDRDH-EGQTRCSLEAH 359
PGR+ PV Y Q P+RD+ E R L+ H
Sbjct: 250 PGRTYPVEIYYTQEPERDYLEAALRTVLQIH 280
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 87 EEYAVKCLYVKNKKESKEN 143
EEY +KCL + +K ESK+N
Sbjct: 368 EEYGIKCLTIPSKPESKKN 386
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +1
Query: 358 GEPPENSGFVPRGPYPVVVDTDGGPVLIVQAAAHTQYLGEIKLFFDDSGNLLDWEGHPHY 537
G P S FVP P P DT IV+ HT ++ D S +L +
Sbjct: 28 GLVPPPSNFVPVYPEPTYSDTVSKKGTIVRVVRHT--ASKLTKHGDSSQSLSTLPNNDIS 85
Query: 538 IGNEIEQAPDV 570
+G +E P V
Sbjct: 86 VGEYVEPLPSV 96
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = -3
Query: 598 MVGIL*FFLKHRALVRFH--SQCNE---DDPPNQVDCLSHRKTV*SRQDTVCARQPGRSI 434
++GI+ FL H + + + C E D+ P + D ++ T+ S +DT+ + + I
Sbjct: 495 LLGIVTSFLSHLIICKIFPVTACGEKFLDERPEETD--NYLLTLESTEDTISSYEETEGI 552
Query: 433 PVRRQYPQRPDRDHEGQT 380
PV++ ++ +G++
Sbjct: 553 PVKKVSYDSKEKSDDGKS 570
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 2.4
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +1
Query: 133 VKKTSTYQLASTGK--LQFTD----EVET--VKAEAEKLHQQGIDIIIVLSHCGLDIDRE 288
V +T +ASTG+ LQ + E ET V+ E + +G D+I + I +
Sbjct: 136 VSRTRVAAIASTGRTVLQLSQMPSQERETLLVQKAQELANTKGADVICLGGAALAAIRDQ 195
Query: 289 IAANGGPHIDIVVGGHSHTLLFNGEPPEN 375
I GP+I I+ G H+ L G +N
Sbjct: 196 IQVAVGPNIPIIDGVHAAVELLAGLARQN 224
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 531 SLHWE*NRTSARCFRKN*SIPTIDRRTSVXGSRFI 635
S H R+++ + KN SIP +DR +S G +
Sbjct: 259 SYHRRRERSNSPSYTKNESIPVVDRDSSPEGGEIV 293
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 154 QLASTGKLQFTDEVETVKAEAEKL 225
Q S + QF + +TVKAE EK+
Sbjct: 254 QKLSAARAQFMEVYDTVKAEVEKM 277
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 469 DTVCARQPGRSIPVRRQYPQRPDRD 395
D+V R+P +IP ++ P +P+++
Sbjct: 238 DSVSLRRPSSNIPAQKPIPPKPEQN 262
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 405 RIGTTRDKPAVLWRLTIKEQGVTMTSYN 322
R+G+T P V WRL ++ + +Y+
Sbjct: 700 RVGSTNFNPQVYWRLGVQMVALNWQTYD 727
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,614
Number of Sequences: 5004
Number of extensions: 53026
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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