Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14o02
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    28   1.4  
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    27   1.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.5  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.3  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   4.3  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   7.6  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   7.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   10.0 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   10.0 

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 463 FIRRKMKNVPHHHSLETEQTELKVILTT 546
           FI+R+M ++P++   ETE++ L + + T
Sbjct: 98  FIKREMLSIPNYAPFETEKSALDITIMT 125


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 238 GPRILPGAGPDEPTVLFDIVLL 173
           GPR  PG  P   T+LFD+ LL
Sbjct: 84  GPRGFPGLIPPNSTLLFDVELL 105


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 324 FYHFPSVE--HILTESYFQHTMYKYVSEVYQDHVF 226
           F+  P  E  H L  SYFQH  + + + VY D ++
Sbjct: 154 FHDIPKKEVAHELVTSYFQHVNWWWPTFVYNDFMY 188


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 267 WCAESKTPLKYVLPTENGKKEFCSETCLSEFRQAYSKGACLHCDTVIRGN 416
           W   ++  L    P+ N +  FC   C S +R+ Y    C++   + + N
Sbjct: 151 WTLMNEIALMPSPPSRNEQPAFCVNWCPSRWREQYIAVGCMNDAYIYKQN 200


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 403 TVSQCRHAPLLYACLNSERHVSEQNSFLPFSVGRTYFNGVLLSAHHV 263
           +V +  H    +A + SE H+  +    P SV   Y N  L+ AH +
Sbjct: 185 SVKRSPHGVSWFATICSETHIENEWHVGPLSVVSAYPNDRLVVAHEI 231


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 564 YDIYQPFDWTEYMKETNSVPAPQECF 641
           Y +  PFDWT Y     ++  P   F
Sbjct: 96  YPVIYPFDWTYYTDYQGTIQRPNAKF 121


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 424 EGTLPRITVSQCRHAPLLYACLNSERHVSEQNSFLPFSVGRTYFNGVL 281
           + + PRI +S   H PL    +NS   + E++  + + +G  Y N +L
Sbjct: 206 DNSRPRILLS---HVPLFRPAINSCGELREKDDVIKYGLGYQYQNLLL 250


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/74 (24%), Positives = 27/74 (36%)
 Frame = -3

Query: 354  LRDMFRSKTLFYHFPSVEHILTESYFQHTMYKYVSEVYQDHVFCRELAPTSRQYYSTLFY 175
            L  +F +    Y         +  Y Q     Y+S +        E    S   +S LF 
Sbjct: 1467 LTAVFCNMAKLYADAKTNGFASSQYLQSLFIHYLSSLLSSMQHSYETNGHSSDTHS-LFV 1525

Query: 174  CNFQRIIKHILTFC 133
             N QR++  IL +C
Sbjct: 1526 INSQRVVGDILQYC 1539


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 488 TFFIFLLINVQTMRRAEIFAARRYITAYNCV 396
           +F I   +NVQTM    I   R +IT+++ V
Sbjct: 418 SFCIDWHLNVQTMSERSILTNRDFITSFSAV 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,583
Number of Sequences: 5004
Number of extensions: 52828
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)