Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14n24
(459 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 117 1e-27
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 73 2e-14
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 5e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 44 1e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 44 1e-05
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 42 6e-05
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 40 1e-04
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 40 2e-04
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 40 2e-04
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 40 2e-04
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 39 3e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.003
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 1.4
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 3.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 4.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 4.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 5.6
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 7.3
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 7.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 24 9.7
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 24 9.7
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 24 9.7
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 117 bits (281), Expect = 1e-27
Identities = 53/70 (75%), Positives = 62/70 (88%)
Frame = +2
Query: 248 LENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITI 427
L+ IRNIGISAHIDSGKTT TER+L+YTGRI +HEV+GKDNVGA MD MELER++GITI
Sbjct: 56 LKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITI 115
Query: 428 QSAATYXIWK 457
QSAAT+ W+
Sbjct: 116 QSAATHCTWE 125
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 73.3 bits (172), Expect = 2e-14
Identities = 37/77 (48%), Positives = 48/77 (62%)
Frame = +2
Query: 227 KYAEHXPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELE 406
+Y + + +IRN+GI AHID+GKTTLTE++L+Y G V D VMD + E
Sbjct: 18 RYQSNISINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNV---DTGDTVMDYLPAE 74
Query: 407 RQRGITIQSAATYXIWK 457
RQRGITI SAA W+
Sbjct: 75 RQRGITINSAAISFTWR 91
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 48.4 bits (110), Expect = 5e-07
Identities = 26/70 (37%), Positives = 43/70 (61%)
Frame = +2
Query: 245 PLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGIT 424
P +RN + AHID GK+TL++ IL TG I++ H + + +D +E+ER+RGIT
Sbjct: 54 PQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINE-HNFRNQ-----FLDKLEVERRRGIT 107
Query: 425 IQSAATYXIW 454
+++ I+
Sbjct: 108 VKAQTCSMIY 117
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 43.6 bits (98), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +2
Query: 254 NIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQS 433
N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+TI+S
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIIS-----AAKAGDARFMDTRADEQERGVTIKS 72
Query: 434 AA 439
A
Sbjct: 73 TA 74
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 43.6 bits (98), Expect = 1e-05
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +2
Query: 254 NIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQS 433
N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+TI+S
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIIS-----AAKAGDARFMDTRADEQERGVTIKS 72
Query: 434 AA 439
A
Sbjct: 73 TA 74
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 41.5 bits (93), Expect = 6e-05
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +2
Query: 251 ENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQ 430
ENIRN + AH+D GKTTL + +L G I ++ G +D E E RGIT++
Sbjct: 17 ENIRNFTLLAHVDHGKTTLADSLLASNGIISS--KLAG---TVRFLDFREDEITRGITMK 71
Query: 431 SAATYXIWK 457
S+A +K
Sbjct: 72 SSAISLFFK 80
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 40.3 bits (90), Expect = 1e-04
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Frame = +2
Query: 272 ISAHIDSGKTTLTERILFYTGRID-----QMHEV-----KGKDNVGAVMDSMELERQRGI 421
++ H+DSGK+T+ RI+F G I+ ++H KG + ++D+ E ER RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 422 TIQSAAT 442
T+ A+T
Sbjct: 242 TMDVAST 248
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Frame = +2
Query: 263 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 412
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 413 RGITIQSAATYXIWK 457
RGITI A +WK
Sbjct: 69 RGITIDIA----LWK 79
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Frame = +2
Query: 263 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 412
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 413 RGITIQSAATYXIWK 457
RGITI A +WK
Sbjct: 69 RGITIDIA----LWK 79
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Frame = +2
Query: 263 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 412
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 413 RGITIQSAATYXIWK 457
RGITI A +WK
Sbjct: 69 RGITIDIA----LWK 79
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.1 bits (87), Expect = 3e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Frame = +2
Query: 263 NIGISAHIDSGKTTLTERILFYTGRIDQ--MHEVK------GKDN--VGAVMDSMELERQ 412
NI H+D+GK+TL ILF TG +D+ M +++ GK++ + +DS ER+
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 413 RGITIQSAATY 445
+G T++ Y
Sbjct: 300 KGKTVEVGRAY 310
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.003
Identities = 27/82 (32%), Positives = 38/82 (46%)
Frame = +2
Query: 191 FQIELQKYSSHVKYAEHXPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKD 370
F + + Y+ + P NI IG H+D GKTTLT I T + + + D
Sbjct: 34 FTVPARTYADEKVFVRKKPHVNIGTIG---HVDHGKTTLTAAI---TKCLSDLGQASFMD 87
Query: 371 NVGAVMDSMELERQRGITIQSA 436
+ +D E+ RGITI SA
Sbjct: 88 Y--SQIDKAPEEKARGITISSA 107
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 206 QKYSSHVKYAEHXPLENIRNIGISAHIDSGKTTLTERIL 322
++YSS+ Y P +R IGI+ SGKT++ + I+
Sbjct: 6 ERYSSNPTY--EPPWRKVRFIGIAGPSGSGKTSVAQLIV 42
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 26.6 bits (56), Expect = 1.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 132 VILKYYIINNSNFIITVQWIFR 67
V+L Y +I++ N ++++ W+FR
Sbjct: 31 VLLIYLVIHSQNELVSMSWLFR 52
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 LKNTKKSSVFQIELQKYSSHVKYAEHXPLENIRNI-GISA 280
L+ T+K S ++K +KYA + L N+R GISA
Sbjct: 274 LQQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFPGISA 313
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 4.2
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = +2
Query: 251 ENIRNIGISAHIDSGKTTLTERILFYT 331
+++R+ ++ H+ GK+ L + +++YT
Sbjct: 138 DDVRSFIVAGHLHHGKSALLDLLVYYT 164
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +2
Query: 140 YAFRLINALKNTKKSSVFQIELQKYSSHV---KYAEHXPLENIRNIGISAHIDSGKTT 304
YAF ++ K S+F E+ K H + H L N+ + D+ TT
Sbjct: 1220 YAFSKCPIVEKNSKKSIFSCEITKVEFHTAVPSSSHHDVLMEENNVHLDLTYDANYTT 1277
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 174 QKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSI 329
Q NR+ Y ++ H+S+ ++W IL Y + +R++ L CSI
Sbjct: 408 QDNRLNIIQGYLDLVHLSDQDQYDNWFTSTILTYLVIDNDQRKYLL---CSI 456
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 217 ITCQICRTXTIGKYSKYWYISSHRLWKDN 303
+ C +C+ TIG K W I +WK N
Sbjct: 475 VNC-LCQNYTIGSLKKVW-IVVQEIWKMN 501
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 177 KNRVYFKLSYRNIHHMSNMQNTNHWKIFE 263
K++ Y K S + I +++NMQ W + +
Sbjct: 122 KSKNYIKKSLQEIVYLTNMQPNVSWNVLQ 150
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 7.3
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 198 LSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSILDE*TKCTRLKVKTML 377
+SY N+ + ++N E+LV ++ ++ + NV + +C R+ V+T L
Sbjct: 50 ISY-NVPPLIVLRNKTIRNSIEVLVEEMFRDIQMRQQTNVLVA------QCPRMIVETQL 102
Query: 378 VLLWTQWSWNVKEELXYSL 434
+ L+ +V EEL S+
Sbjct: 103 IGLFQSNYTSVAEELEQSI 121
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 423 VIPL*RSNSIESITAPTLSLPLTSCIWSIR 334
+ PL + N + I +PT + PL+ W R
Sbjct: 255 ISPLQKVNKQQQIESPTATFPLSKNTWKNR 284
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 376 NIVFTFNLVHLVYSSSIEQNTFSECC 299
NI+ N ++L+Y + I T S CC
Sbjct: 34 NIIVLSNYLYLLYKAWIVCTTISLCC 59
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 287 LCELIYQYFEYFPMVXVLHI*HVMNIS 207
LC I+ ++ ++ VLH+ HV I+
Sbjct: 115 LCNAIWSFYTTIVILAVLHVTHVFPIT 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,318
Number of Sequences: 5004
Number of extensions: 38434
Number of successful extensions: 118
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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