Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14n22
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 50 2e-07
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 45 9e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 41 1e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 37 0.002
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.088
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.9
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +2
Query: 290 ELTELKCLRSLNVRHNKVKTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLN 469
E+ + LR LN+R N ++ P L LE L LD+S N++K++PE +L VL+
Sbjct: 70 EILKFTRLRYLNIRSNVLRE--FPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLS 127
Query: 470 LSHNRIETIP 499
+S NR+ +P
Sbjct: 128 ISKNRLFELP 137
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +2
Query: 320 LNVRHNKVKTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIETIP 499
L + HN +K+ G E+ L L++ N L+E PE L + +SL +L++S N+I+ +P
Sbjct: 57 LALGHNFIKSIG--PEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLP 114
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +2
Query: 293 LTELKCLRSLNVRHNKVKTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNL 472
L L+ L L++ NK+K +P L L L +S NRL E+P + +L +L +
Sbjct: 94 LCRLESLEILDISRNKIKQ--LPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKI 151
Query: 473 SHNRIETIPP 502
+N I PP
Sbjct: 152 ENNHIVFPPP 161
Score = 33.9 bits (74), Expect = 0.017
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +2
Query: 380 EELTTLDLSHNRLKEVP-EGLEKAKSLLV-LNLSHNRIETIPP 502
E TLDLSH L+E+P E LE+ + + L L HN I++I P
Sbjct: 27 ENALTLDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGP 69
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 44.8 bits (101), Expect = 9e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 356 IPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIETIPP 502
+ +LF LT L ++HN L +P + K K+L++L+ S N I+TIPP
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPP 221
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 389 TTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIETIPP 502
T LDL L+ V L K L L ++HN + +PP
Sbjct: 161 TCLDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPP 198
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 40.7 bits (91), Expect = 1e-04
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 320 LNVRHNKVKTSGIPAELF-HLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRI 487
L +R + K IP +F L+ L +LDLS N L E+P L + L LNL+ N+I
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 311 LRSLNVRHNKVKTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIE 490
L+ LN+ +NK+ +P +L LT LDLS+N P + + L LN SHN +
Sbjct: 504 LKELNIANNKLFF--LPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLS 561
Query: 491 TI 496
I
Sbjct: 562 QI 563
Score = 34.3 bits (75), Expect = 0.013
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +2
Query: 350 SGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIETI 496
S + L L+ L LDL N +K PE + + SL V+NLS N +E I
Sbjct: 719 SYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKI 767
Score = 32.3 bits (70), Expect = 0.051
Identities = 25/112 (22%), Positives = 48/112 (42%)
Frame = +2
Query: 146 PDAIRYMTGLQWLRLDKTNLCDIPEELGXXXXXXXXXXXXXXXXXXFGELTELKCLRSLN 325
P + RY+ L +L L N P + ++ L L+ L
Sbjct: 518 PHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLY 577
Query: 326 VRHNKVKTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHN 481
++ N + ++ +P E+ L+ L T+DLS+N + + L + L +N++ N
Sbjct: 578 LQFNDL-SNRLPQEIGLLKNLETIDLSYNAITNI-ASLSECPKLNSINVACN 627
Score = 30.7 bits (66), Expect = 0.15
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 293 LTELKCLRSLNVRHNKVKTSGIPAELFHLEELTTLDLSHNRL-KEVPEGLEKAKSLLVLN 469
+++LK +R+L+ N V S + ++ F + + L L NRL + LE K L VLN
Sbjct: 781 ISQLKIMRTLS--GNPV--SSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFKCLKVLN 836
Query: 470 LSHNRIETIP 499
LS+N + IP
Sbjct: 837 LSYNYLTEIP 846
Score = 28.7 bits (61), Expect = 0.62
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 311 LRSLNVRHNKVKTSGIPAELFH-LEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRI 487
L SLNV HN + +P + +L LD+S+N + + + L VLN+S N I
Sbjct: 431 LISLNVSHNL--SLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDI 488
Query: 488 ETIPP 502
+ P
Sbjct: 489 YELDP 493
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 293 LTELKCLRSLNVRHNKV-KTSGIPAELFHLEELTTLDLSHNRLKEVPEGLEKAKSLLVLN 469
+T L+ L LN+ N + + + L L++++N+L +P +L L+
Sbjct: 472 ITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLD 531
Query: 470 LSHNRIETIP 499
LS+N T P
Sbjct: 532 LSYNNFVTFP 541
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 386 LTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIETI 496
L TL + NRL P+ +KSL L++S N ++ +
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNL 915
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.088
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -2
Query: 220 FRYITKVCLVESQPLQSSHIANSIRKFIVAEIVTREINSPHKRQ*ACICHVYNFFY*LHY 41
F +ITK V + S HI+ +F +A+I +E N P+ Q H ++ +H
Sbjct: 18 FTFITKFPFVRNVHKLSYHISPLSSRFSLADISVKENNHPNGPQLRLQTHFFHSSSPMHA 77
Query: 40 TSYFSF 23
T F F
Sbjct: 78 TKGFRF 83
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 1.9
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 284 FGELTELKCLRSL-NVRHNKVKTSGIPA--ELFHLEELTTLDLSHNRLKEVPEGLEKAKS 454
+ +L +L L SL ++R KV ++ + + + HL+ L L +NR+KE+
Sbjct: 677 YNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRIKELSFTNSNLHR 736
Query: 455 LLVLNLSHNRIETI 496
L L L +N IE I
Sbjct: 737 LEELLLGNNEIEEI 750
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 377 LEELTTLDLSHNRLKEVPEGLEKAKSLLVLNLSHNRIE 490
+ L LDLSHN + ++ E L+ + + L L NRI+
Sbjct: 890 MPNLRVLDLSHNYISDI-ESLKPLQMIHRLYLVGNRIK 926
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,955
Number of Sequences: 5004
Number of extensions: 42766
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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