Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14n13
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 166 2e-42
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 43 3e-05
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.2
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 26 5.6
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.6
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 25 7.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.4
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 25 9.8
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 166 bits (404), Expect = 2e-42
Identities = 85/180 (47%), Positives = 109/180 (60%), Gaps = 5/180 (2%)
Frame = +3
Query: 141 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 320
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 321 DTNTILNLLSAIKFNGGGHINHSIFWLNLTP-----CKTVPSCPFSQAVEKDFGSWDNLK 485
D + L +AIKFNGGGHINHS+FW L P K V S +A+ +GS ++ +
Sbjct: 75 DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQ 134
Query: 486 NQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQ 665
+++ A ++QGSGW WL +K L+I T NQD + + P+ GID WEHAYY Q
Sbjct: 135 KEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYPQ 190
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 450 VEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD---------PLQ 602
++ FGS+ LK+Q+ +V G GW WL Y+ + + N P
Sbjct: 106 IDASFGSFGELKSQMVDVGNSVFGDGWLWLVYSPEKSLFSLLCTYNASNAFLWGTGFPKF 165
Query: 603 ATTGLVPLFGIDVWEHAY 656
T +VPL +++W++AY
Sbjct: 166 RTNAIVPLLCVNLWQYAY 183
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 582 QNQDPLQATTGLVPLFGIDVW 644
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 601 RPPLDWSRSSESMYGSTR 654
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 5.6
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Frame = +3
Query: 171 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKD----TNT 332
HT+P L + N L P+ S E + + +H + LN V +L + + T
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 333 ILNLLSAIKFNGGGHINHSIFWLNLTP--------CKTVPSCPFSQAVEKDFGSWDNLKN 488
+ + +F + NH F + K + ++AV ++FGS +NL +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 489 QLSTASVAVQGSGWGWL 539
++ + G+ W W+
Sbjct: 157 KIHELASNSFGACWLWI 173
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 665 LKIVRVLPYIDSEERDQSSGGLQRIL 588
+K + +P +D+EER + GLQ I+
Sbjct: 418 IKNIAEMPTVDAEERSRIFAGLQHII 443
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.6
Identities = 29/109 (26%), Positives = 44/109 (40%)
Frame = +3
Query: 162 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKDTNTILN 341
RQKHT P P +A S HH HH+ N+ E+ + + N+ +
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHS---GLKNLLEKAMHPGHKSNANSPTS 143
Query: 342 LLSAIKFNGGGHINHSIFWLNLTPCKTVPSCPFSQAVEKDFGSWDNLKN 488
+ F G IN+ I N + + P S + K S+ +LKN
Sbjct: 144 ESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 225 REIMSLHHSKHHATYINNLNVAEEKLAQAQAKDTNTILNLLSAIKF-NGGGH 377
RE + H Y NN+N ++ A D NT + + + + N GGH
Sbjct: 139 REELDKKHRDKSYRYFNNINRLAKEYPLAHLADPNTRVEVWCSNDYLNMGGH 190
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 272 DISRVMFAVMKTHDFTANDRLQCIVLVRK 186
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 332 YSKFVECDQIQWRRAYKSLNIL 397
Y +F E +WR+ YK+L +L
Sbjct: 74 YRRFTEKTAEEWRQIYKALQLL 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,736
Number of Sequences: 5004
Number of extensions: 56043
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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