Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n08
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    44   2e-05
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    31   0.21 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    29   0.64 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.1  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    28   1.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   3.4  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   5.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   7.9  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 54/101 (53%)
 Frame = +3

Query: 267 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 446
           ES+ +IF++ +   K      K+  V    R++ D  S E + A  T+ I  + +  + +
Sbjct: 177 ESIHRIFNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYTSRILALSDHCKNH 236

Query: 447 PRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNI 569
            ++   K+ ++  + +R+++LKYLR+ ++ ++   ++ L +
Sbjct: 237 KKDQTGKRMLRYYVHQRQRMLKYLRKVNFDRYVHCIKNLGL 277


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = +3

Query: 498 KKLLKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRKLTELHCDDIRNS 665
           K   +Y++QY+  + + LL +  I  + + + FHK +++    K  +L C ++ N+
Sbjct: 3   KSRFEYVKQYE--RLDRLLPETYIVIRIDGKGFHKFTKKHDFEKPNDLRCLNLMNA 56


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 516 LRQYDYKK-FEWLLEKLNIEYKGNPESFHKLSRRESLRKLTELHCDDI 656
           +  YD +K F+W L  L    + + E F+ L  R S  KLT L  DDI
Sbjct: 319 ISDYDPRKGFKWKLSSLK---ERSAEIFNTLGERNSSSKLTNLTEDDI 363


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +3

Query: 183 GDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRH 362
           G  E +P       A + A+S E ++  +S ++    + L  + F +L +   + R KRH
Sbjct: 2   GQGESIPSRQIQRDASMQAVSSESENINDSDRQNSGFSRLWNR-FPSLQRVLGLRRAKRH 60

Query: 363 QYDENSAEN 389
           + DE ++EN
Sbjct: 61  RNDEGNSEN 69


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +3

Query: 324 LVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQT 473
           L+  E+  RV     +ENS   KI +   ++  +++++E  P N+++++T
Sbjct: 46  LLAGEIYGRVCFWLKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEET 95


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 159 PAYKPEKSGDLEGLPPIPENSIADIYALSEEIKD 260
           P  KPEKS   +  PP+PEN   D   L   + +
Sbjct: 450 PENKPEKSSTSK--PPVPENKAEDSVVLKSSVPE 481


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 213  ENSIADIYALSEEIKDAPESVKKI 284
            EN+I +I A++EE+K+  E V KI
Sbjct: 939  ENAIKEISAIAEEVKNLVEKVIKI 962


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 216  NSIADI--YALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAEN 389
            N++ DI  +A  E+  DA     ++F    L  K+F    + +L+       Y ENS EN
Sbjct: 864  NAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEN 923


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/115 (20%), Positives = 52/115 (45%)
 Frame = +3

Query: 171 PEKSGDLEGLPPIPENSIADIYALSEEIKDAPESVKKIFSVAHLGQKEFHTLVKKELVNR 350
           PE+S   + L         D+Y  +E +K   E +      A    +E  + ++  L  R
Sbjct: 250 PEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSA----EELDSAIQV-LEER 304

Query: 351 VKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQTVQEMIDRRKKLLKY 515
            +  Q DE   ++ ++ + + +    N+M++   N + K++  +++  ++  LKY
Sbjct: 305 YRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKY 359


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 504 LLKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRRESLRKLTEL-HCDDIRNSKL 671
           +LKYL    YK     LEKL ++ K N   F        L+++ EL    D +N ++
Sbjct: 628 VLKYLETISYKVSIIYLEKLLLDNKFNDTVFPTRLALLYLKRILELEETTDFKNQEV 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,604
Number of Sequences: 5004
Number of extensions: 58714
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)