Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n08
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387...    55   6e-08
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383...    55   6e-08
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587...    47   2e-05
04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054     29   4.6  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   6.1  
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558...    28   8.1  

>06_01_0541 -
           3874476-3874694,3874816-3874868,3875944-3876055,
           3876143-3876321,3876358-3877195
          Length = 466

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 32/105 (30%), Positives = 56/105 (53%)
 Frame = +3

Query: 255 KDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNI 434
           K   E V++ F   H+   E      + + +  K  + D  SA  ++A+LT  I+ +   
Sbjct: 331 KPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTT 390

Query: 435 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNI 569
           + K  ++S+  + +QEM+ RRKK LKYLR+ D+  +  +L KL +
Sbjct: 391 LHKKDKHSR--KGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGL 433


>06_01_0531 -
           3836420-3836638,3836760-3836812,3837888-3837999,
           3838087-3838265,3838302-3839139
          Length = 466

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 32/105 (30%), Positives = 56/105 (53%)
 Frame = +3

Query: 255 KDAPESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNI 434
           K   E V++ F   H+   E      + + +  K  + D  SA  ++A+LT  I+ +   
Sbjct: 331 KPQQELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTT 390

Query: 435 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNI 569
           + K  ++S+  + +QEM+ RRKK LKYLR+ D+  +  +L KL +
Sbjct: 391 LHKKDKHSR--KGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGL 433


>02_05_1120 +
           34257504-34258294,34258483-34258571,34258616-34258713,
           34259269-34259292,34259314-34259404,34259761-34259813,
           34259933-34260151
          Length = 454

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
 Frame = +3

Query: 393 IARLTAYIRCIQNIMEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNI- 569
           +A+LT  I+ +  ++ K  ++S+  + +Q+M+ RRKK LKYLR+ D+  +  +L KL + 
Sbjct: 365 VAQLTVKIKHLSTVLHKKDKHSR--KGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLR 422

Query: 570 ---EYKGNPESFHKLSRRESLRK 629
              EYK  P+  +K + +   +K
Sbjct: 423 DVPEYKA-PDYKNKSTSKAKSKK 444


>04_03_0396 + 15361501-15361663,15361726-15361806,15361909-15362054
          Length = 129

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = +3

Query: 435 MEKNPRNSKMKQTVQEMIDRRKKLLKYLRQYDYKKFEWLLEKLNIEYKGNPESFHKLSRR 614
           ++ N R +KM Q   +        L+ +R+Y +  F   + K  + Y G+P  ++     
Sbjct: 14  LDNNQRRAKMMQCRLKEAKETSTWLQ-VRKYIWINFALRINKGRLAYAGSPNIYNLQEGE 72

Query: 615 ESLRKLTELHCDDIRN 662
            S  K+  L C  I++
Sbjct: 73  GSSNKMPHLGCRKIQH 88


>01_05_0117 -
           18300157-18301106,18301149-18301543,18302592-18302681,
           18303723-18303836,18303903-18304046,18316147-18316312,
           18316396-18317130,18317219-18317422,18317496-18318177,
           18318272-18318528,18318604-18319298,18319345-18319382,
           18319847-18319928,18320018-18320112,18320443-18320526,
           18320601-18320891,18321521-18321853,18321948-18322150,
           18322243-18322399,18322482-18322585,18322675-18322835,
           18323511-18323824,18324317-18324589,18324666-18324967,
           18325459-18325549,18326140-18326190,18326700-18326768,
           18326926-18327017,18327082-18327148,18328582-18328746,
           18329027-18329103,18329572-18329766,18330208-18330275,
           18331081-18331172,18331399-18331522,18331608-18331705,
           18332384-18332997,18333620-18333626
          Length = 2892

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 372 HHTDASSLCLLVLS*PMCEILFVQDVPQKIFFLPI 268
           HH +A  LCLL L    C I F+ D P  +F LPI
Sbjct: 519 HHLNAIGLCLLSLLVYYC-INFLSDSPM-LFLLPI 551


>12_02_0590 -
           20853040-20853081,20853694-20853918,20854995-20855886,
           20856120-20856122,20856284-20856513
          Length = 463

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 351 VKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKQTVQEMID 491
           V+R  +D  +A    A+    +RC   + EK PR  K K+  +EM++
Sbjct: 28  VRRPSWDGGAAVGGRAKGFGVVRCC--VQEKKPRVRKTKEERREMVE 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,710,109
Number of Sequences: 37544
Number of extensions: 311082
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)