Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte14n06
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 31 0.78
01_05_0140 - 18528312-18528353,18528426-18529052,18529914-185299... 30 1.0
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286... 29 2.4
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 28 4.1
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 5.5
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 28 5.5
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 27 7.2
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 27 7.2
05_06_0181 - 26178006-26178836 27 7.2
03_01_0183 - 1474202-1474276,1474511-1474627,1474791-1474847,147... 27 7.2
10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386 27 9.6
08_02_0972 - 23187294-23188034 27 9.6
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 205 SIYPSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQA 336
S+YPS K+ +Y + W +V K F K+L S E+L A
Sbjct: 152 SVYPSVCKMIRSYCMNPSSHSGWTRVIVEKPFGKDLESAEELSA 195
>01_05_0140 -
18528312-18528353,18528426-18529052,18529914-18529962,
18530086-18530108
Length = 246
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 257 RQTTRYANPNFVYDGYMLTSDLANSGKPGYSGTRLLISSGLFILQF-ICVFNGFLSKH 87
R T Y NFV ++ + G+ S T+ + S L LQF C F+G L+ H
Sbjct: 35 RLITEYGVKNFVAVQHLTIENCTQIGQNLLSSTKSWLPSNLRFLQFSSCTFSGVLNFH 92
>04_04_1264 -
32227812-32228114,32228199-32228349,32228454-32228691,
32228786-32228996,32229077-32229270,32229334-32229450,
32229580-32230522
Length = 718
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 18 FDSRKYKSIDYFIFDSSLQSLLD 86
F+ + KS+DYF+FD S + +LD
Sbjct: 475 FEYLRNKSLDYFLFDDSKKPILD 497
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 36 KSIDYFIFDSSLQSLLD 86
+S+DYF+FD S +S+LD
Sbjct: 585 RSLDYFLFDDSKKSMLD 601
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 250 VCRHR-YHWAKVAQRKQFMKELHSFEKLQANALDGVRVHREFSQ-GILSHVIPPRRYMQK 423
+C H+ Y V ++ + EL K+Q + VRV Q G L V P RR QK
Sbjct: 517 ICNHQLYKLLPVELNQEQLDELEIEAKIQETKISDVRVQVADEQSGSLDWVHPSRR-PQK 575
Query: 424 LTTDPLT 444
L + +T
Sbjct: 576 LAAEAVT 582
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 418 QKLTTDPLTPKERMRVEEIISGRVNFGQK 504
QKL P+TP +R+ V E +S + N G++
Sbjct: 553 QKLEAIPMTPDQRVLVGEYLSDKENKGKR 581
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 295 QFMKELHSFEKLQANALDGVRVHREF--SQGILSHVIPPRR 411
Q+M ++H ++ DG+ V RE + G + VI PRR
Sbjct: 506 QYMTQMHCLAPFGSDLADGLTVAREILENYGCVLRVISPRR 546
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -2
Query: 521 ENPYVYFCPKL-TLPLII--SSTRILSLGVKGS 432
E Y+Y CPKL LPL I +TR+ L ++G+
Sbjct: 756 EKLYIYGCPKLRALPLEIGQGTTRLRELHIRGA 788
>05_06_0181 - 26178006-26178836
Length = 276
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 214 PSYTKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGV 354
P + +G+ R++ RHR+ A RKQ + L KL+ L G+
Sbjct: 75 PLFLSIGIL-RIILRHRHDNGITAVRKQAPQLLRQGRKLKTMELGGI 120
>03_01_0183 -
1474202-1474276,1474511-1474627,1474791-1474847,
1475149-1475196,1475313-1476101,1476516-1476646,
1476769-1476937,1477954-1478541
Length = 657
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 241 YRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDG 351
Y++ C RY K+ +R +F+ H+F+ ++ L+G
Sbjct: 582 YKLHCTSRYTQPKINRRMEFVFASHTFDVWESWMLEG 618
>10_08_0542 - 18642683-18643816,18643952-18644193,18645152-18645386
Length = 536
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 415 MQKLTTDPLTPKERMRVEEIISGRVN 492
+QK+ D LT K R +EE+ +G VN
Sbjct: 455 LQKIGEDALTKKMRRSIEELSTGIVN 480
>08_02_0972 - 23187294-23188034
Length = 246
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 394 VIPPRRYMQKLTTDPLTPKERMRVEEIISGRVNFGQK 504
V PP+R +++TDP + RMR E IS R+ Q+
Sbjct: 147 VRPPKRRNVRISTDPQSVAARMR-RERISERIRILQR 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,679
Number of Sequences: 37544
Number of extensions: 311957
Number of successful extensions: 606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -