Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n04
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    52   1e-07
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   3.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   5.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.4  

>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = +3

Query: 471 QVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFLQGIYFE 650
           ++ +KW+E +   LP+     ++G  RL  +    + + Y+PW+IR G NAK L  +Y+E
Sbjct: 190 ELAIKWLEFVNMGLPVGALSALFGPLRLNCEQASRFRRVYIPWSIRNGLNAKTLINVYWE 249

Query: 651 K 653
           K
Sbjct: 250 K 250


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 98  VEMYKKLTRKLHFICNNFGALLKDNTRLISFL 3
           +E + KLT++L  I N FG +   N  L+S L
Sbjct: 704 IEEHSKLTKQLDDIKNQFGIISSKNRDLLSEL 735


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 357 NFVLSDFFLDSFIKSNPDFSLSLSCV 280
           +F +S F  DSFI+SNP  S   + V
Sbjct: 417 DFDMSPFIDDSFIQSNPKISTKYNLV 442


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +3

Query: 192 LLLCHVLFEIITKLFEIKIRMKLQILN 272
           +LLC  L+ ++T  F+I ++ +L +++
Sbjct: 289 VLLCFFLYSLLTPFFDIHLQFQLIVMH 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,069
Number of Sequences: 5004
Number of extensions: 48589
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)