Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n04
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q (ub...    67   1e-11
AL117207-19|CAB60401.2|  142|Caenorhabditis elegans Hypothetical...    29   3.9  
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016421-9|AAC25791.1|  329|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 4 protein.
          Length = 231

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 40/64 (62%)
 Frame = +3

Query: 471 QVTVKWVEGIQTKLPMCIGGGIWGAARLRPKHRQMYLKYYLPWAIRTGNNAKFLQGIYFE 650
           +VTVK+ EGIQ  LPMC+ GGI+G ARL  K+RQ  +   LPW +    NA+F     +E
Sbjct: 149 EVTVKYFEGIQYGLPMCVTGGIFGGARLLTKNRQELVDRNLPWVVEQATNARFFMAFDWE 208

Query: 651 KRWE 662
             +E
Sbjct: 209 NHFE 212


>AL117207-19|CAB60401.2|  142|Caenorhabditis elegans Hypothetical
           protein Y60A3A.16 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 372 VLKHISKLLGVYDIVY*EEYKGILEAFTIISAKQVTVKW 488
           +LK I K+LG Y I Y ++ + +L    +      +VKW
Sbjct: 64  ILKEIQKVLGSYGIDYEQQKRFLLRCSHVDPLTDASVKW 102


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
 Frame = +3

Query: 87  IHLYTMIHR-IKFTSGRCCSNAVLNA-----LEPWQW*FKDLLLCHVLFEI--ITKLFEI 242
           I +   IH+ I F    CCS  +L+A     LEP+ W F   ++ H L  I  I+ L  I
Sbjct: 143 ISIQKYIHKYIVFVYLACCSRYMLSAVIGSSLEPYGWKFLGPIVQHFLTIILFISVLLYI 202

Query: 243 KIRMKLQILNRLQ 281
            + + ++ L+ LQ
Sbjct: 203 PVIISVRKLSHLQ 215


>AF016421-9|AAC25791.1|  329|Caenorhabditis elegans Hypothetical
           protein F44E7.6 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 432 KGILEAFTIISAKQVTVKW 488
           KG+LE+  I+SAK V + W
Sbjct: 158 KGVLESIGILSAKSVLINW 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,537
Number of Sequences: 27780
Number of extensions: 273567
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)