Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n03
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    29   0.40 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   4.9  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   8.5  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 76  QRTEATKVYITLRVREGAVLGVLPVVLFAECCPQT---CKLFIDLLQGDGLGH 225
           +R++    Y  L+++E +V G   V LF    P     CKL   LL+GD + H
Sbjct: 4   KRSDYASAY--LKIKEASVSGGCTVQLFVALDPDALCACKLLSTLLKGDFISH 54


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 484 GICLLSNFSYCFLWSNCL 431
           G  L SN+++CFL   CL
Sbjct: 148 GFDLFSNYTFCFLGDGCL 165


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 198 INKQFASLRTALREQNHREHSQHRSLSH 115
           +   F  +    REQ+H+ + QHR L H
Sbjct: 591 LKDSFELITAFSREQDHKIYVQHRLLEH 618


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 222 SWIRWDEIFHVRILIQKYIY 281
           SWIRWD I+ V + +   ++
Sbjct: 86  SWIRWDAIYFVDMAVNGSLF 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,750
Number of Sequences: 5004
Number of extensions: 42673
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)