Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14n03
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27354-1|AAC47124.1|  201|Caenorhabditis elegans cyclophilin pro...    37   0.010
U00051-7|AAA91355.1|  201|Caenorhabditis elegans Cyclophylin pro...    37   0.010
U64844-6|ABC71797.1|  174|Caenorhabditis elegans Hypothetical pr...    34   0.068
Z92784-1|CAB07192.1|  204|Caenorhabditis elegans Hypothetical pr...    31   0.48 
U31948-1|AAC47126.1|  204|Caenorhabditis elegans cyclophilin iso...    31   0.48 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z66499-2|CAA91297.1|  183|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U34955-1|AAC47115.1|  183|Caenorhabditis elegans cyclophilin iso...    28   5.9  

>U27354-1|AAC47124.1|  201|Caenorhabditis elegans cyclophilin
           protein.
          Length = 201

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 94  KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKF 246
           KV+  + +  G  +G + + LF E  P+T K F++L Q    G GYVG+KF
Sbjct: 27  KVFFDMEIG-GRPVGKIVIGLFGEVVPKTVKNFVELAQR-AEGEGYVGSKF 75


>U00051-7|AAA91355.1|  201|Caenorhabditis elegans Cyclophylin
           protein 6 protein.
          Length = 201

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 94  KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKF 246
           KV+  + +  G  +G + + LF E  P+T K F++L Q    G GYVG+KF
Sbjct: 27  KVFFDMEIG-GRPVGKIVIGLFGEVVPKTVKNFVELAQR-AEGEGYVGSKF 75


>U64844-6|ABC71797.1|  174|Caenorhabditis elegans Hypothetical
           protein T22F3.12 protein.
          Length = 174

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 94  KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKFF 249
           KV++ +   +GA LG L   L  E CP+TC+ F+ L  G   G GY    F+
Sbjct: 4   KVFMDITA-DGAPLGKLVFELNTEKCPKTCENFVKLCTGPP-GFGYKNCVFY 53


>Z92784-1|CAB07192.1|  204|Caenorhabditis elegans Hypothetical
           protein F31C3.1 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 94  KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKF 246
           KVY  + +  G  +G + + LF +  P+T   FI+L +    G GY G+KF
Sbjct: 30  KVYFDMEIG-GKPIGRIVIGLFGKTVPKTATNFIELAK-KPKGEGYPGSKF 78


>U31948-1|AAC47126.1|  204|Caenorhabditis elegans cyclophilin
           isoform 5 protein.
          Length = 204

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 94  KVYITLRVREGAVLGVLPVVLFAECCPQTCKLFIDLLQGDGLGHGYVGTKF 246
           KVY  + +  G  +G + + LF +  P+T   FI+L +    G GY G+KF
Sbjct: 30  KVYFDMEIG-GKPIGRIVIGLFGKTVPKTATNFIELAK-KPKGEGYPGSKF 78


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
           protein F23D12.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 508 RHTHACILGICLLSNFSYCFLWSNCLSN*YLSKV 407
           R  H  I+     + +SYC  WS+ +S  YLSK+
Sbjct: 9   RGQHTSIMTSLFSNLWSYCGTWSSLVSEDYLSKI 42


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 162 REQNHREHSQHRSLSHPQRYVHLGSFSSLCRNVSVVLRKGPIRI 31
           ++Q+  EH +    SH + +  + + S+LC   S V    P ++
Sbjct: 409 KQQSREEHDKMSDKSHEEEHTSVSTDSALCSETSEVRGPSPYKL 452


>Z66499-2|CAA91297.1|  183|Caenorhabditis elegans Hypothetical
           protein T01B7.4 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 124 GAVLGVLPVVLFAECCPQTCKLFIDLLQG----DGLGHGYVGTKF 246
           GA +G + + LFA+  P+T + F     G    DG+ +GY    F
Sbjct: 27  GAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTF 71


>U34955-1|AAC47115.1|  183|Caenorhabditis elegans cyclophilin
           isoform 11 (CYP-11) protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 124 GAVLGVLPVVLFAECCPQTCKLFIDLLQG----DGLGHGYVGTKF 246
           GA +G + + LFA+  P+T + F     G    DG+ +GY    F
Sbjct: 27  GAPIGTIVIELFADVTPRTAENFRQFCTGEYKKDGVPNGYKNCTF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,375,678
Number of Sequences: 27780
Number of extensions: 235998
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)