Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m24
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   1.7  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   4.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.9  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.9  

>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 492 KPERSQVLDVVEKNDLDLPSTFT----VTSLLKDFSEIQN 599
           +P +  +LD+    D  + +TFT    +T +LK F ++ N
Sbjct: 19  RPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMN 58


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +3

Query: 48  EIFFGILTKIIYRPILVKNSSNLINQIIEKRS----YHL*AVL*YN*SEMTTNNRPMSKM 215
           E  F  L  +IY P L  +SSN +  +++  S    Y +  +L YN S   T+    + +
Sbjct: 276 ECLFNNLKALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLL-YNASFAITS--LFNAL 332

Query: 216 RMIESKEALFRARKRILKYMVLGYLKQE 299
            +++ K + F  ++ ++  ++ G+L +E
Sbjct: 333 LILDPKSSTFIFQENVVS-LISGFLLKE 359


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 385 LYSRIIAAIILYDLTSSPSSVV 450
           +YS  +A  I YD++S+P+S V
Sbjct: 364 IYSGTVATTITYDVSSTPASTV 385


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 369 NIDLDIILQDYCSYYLIRFNKQPQFCRKVEE 461
           N+DL I+ Q YC +YL R  K P   + V E
Sbjct: 463 NLDLYILKQFYC-HYLDRNRKPPLNIKSVSE 492


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 30  AFS*NREIFFGILTKIIYRPILVKNSSNLINQIIEKRSYHL 152
           +F+ +  I F +L  I YRP+ +   +  I    E+  +HL
Sbjct: 607 SFTDSSIIIFDLLMMIFYRPLSLSYITTEIRSPFERNLFHL 647


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 467 WFLLHFTTELGLLVKSYKIIA 405
           WF +H +TE    VKS ++IA
Sbjct: 166 WFPMHASTEFRCFVKSKRLIA 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,826
Number of Sequences: 5004
Number of extensions: 47039
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)