Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m24
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +3

Query: 357 EVCDNIDLDIILQDYCSYYLIRFNKQPQFCRKVEEKPVRPQTRRVKPERSQVLDVVEKND 536
           EV +   +D +  DYCS+ ++ +       + +EE       +++   RS++++V  +  
Sbjct: 382 EVEETFPIDNLKSDYCSHIVVPYFALDLSDKMIEEDKAEDLVKKIDDWRSKIVEVAPRLI 441

Query: 537 LDLPS 551
           L + S
Sbjct: 442 LSVGS 446


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 423 FNKQPQFCRKVEEKPVRPQTRRVKPERSQVLDVVEK 530
           F  + QFC+K  E PV+      + E   VLD++ K
Sbjct: 368 FAHETQFCKKDNETPVKKPYSSNQDEDHSVLDMIRK 403


>U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical
           protein F32E10.5 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +3

Query: 243 FRARKRILKYMVLGYLKQEGYLLTAETFNTEANLTGEYEVCDNIDLDIILQDYCSYYLIR 422
           ++ R+ I KY    +   EG  +     N    L  EY   +NI +D+     C YY I 
Sbjct: 25  YQIRQYIEKYPQFLWKYSEGVTIPGYVLNIAEQLNSEYGNVENIPIDLY---PCEYYRIV 81

Query: 423 FNKQP 437
            +  P
Sbjct: 82  EHSMP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,255
Number of Sequences: 27780
Number of extensions: 251130
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)