Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m17
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.59 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.4  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    27   1.8  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.3  
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.7  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   9.7  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 323  GGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRN---MKLVQFSYKDSPKNIRVGYL 493
            G    SF K+  LSKS+  +DI  N ++  +V K       KL Q  Y +   N    + 
Sbjct: 886  GNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFS 945

Query: 494  EGDD 505
            E +D
Sbjct: 946  EHED 949


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 29  LYLHKRILATSFRICYNLMH*NNLWIGSDVNRKLIKIKSILHFTHYFLL*KLVKTS 196
           LY   R++A S ++ Y     +N W+   +   ++K++ I HF    L+   V+TS
Sbjct: 412 LYELIRLIAYSGKLDYMKDILDNFWVRQKLLPSILKVEQIFHFIFRALISAEVQTS 467


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 491 LEGDDIVDINKADSSLPTTLLQILRNGDLEKVKKLKSTKPA 613
           L+GD +  + K D  +P++L + +RN ++     ++  KP+
Sbjct: 198 LKGDVLAHVGKIDKGVPSSLQKFVRNLEVLDFSGVEPKKPS 238


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 589 LHFF*VSIPEYLEQSGRQTGVRLINIYNIISFQVAHTYIFWTIFV*KLN*LH 434
           L+ + + + E++   GR  G  L+   +I++++    YIF T+F   LN L+
Sbjct: 115 LYIYEIQLDEHIR--GRNVGKWLLKNASILAYRRNLKYIFLTVFSANLNALN 164


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 482 HVYFLDYLCMKTEL 441
           H YF D+LC+ TEL
Sbjct: 767 HFYFRDHLCVATEL 780


>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 513 ILIRRTPVCRPLCSKYSGM 569
           +L  RTP+C PL S   GM
Sbjct: 22  LLTSRTPLCAPLFSHLDGM 40


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +2

Query: 395 NTIRCFSVTKTRNMKLVQFSYKDSPKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGD 574
           NT+       TR  +  + S+  SP   R    EGD  +    A + L T   ++   G 
Sbjct: 39  NTVDSRGDAHTRMRQGFEKSFPSSPNKKRPRTNEGDRFIPSRDASTELWTGFTKV--EGP 96

Query: 575 LEKVKKLKS 601
           L  VKK +S
Sbjct: 97  LTPVKKKQS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,636
Number of Sequences: 5004
Number of extensions: 50214
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)