Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m17
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54061-1|CAA37996.1| 1163|Drosophila melanogaster 205 K microtub...    33   0.34 
BT003276-1|AAO25033.1| 1163|Drosophila melanogaster LD12965p pro...    33   0.34 
AE014297-4842|AAN14301.1| 1185|Drosophila melanogaster CG1483-PB...    33   0.34 
AE014297-4841|AAF57214.1| 1163|Drosophila melanogaster CG1483-PA...    33   0.34 

>X54061-1|CAA37996.1| 1163|Drosophila melanogaster 205 K
            microtubule-associated proteinprotein.
          Length = 1163

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +2

Query: 284  KSLRST*TMSRVIGGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKD 463
            KSL    +++ V GG+ +   K+H  +K+ +      +      + KT       +    
Sbjct: 758  KSLSEKTSVATVAGGAVVGATKTHSATKAGSTAASAKSKTETLVMKKTTASSTSVYGANK 817

Query: 464  S----PKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVK---KLKSTKPATIP 622
            S    P   R+G ++   I       SSL     + L +     VK   KL  T+PAT P
Sbjct: 818  SAAPRPSTARLG-IKSTSIATKTSTTSSLTGNPRKSLSSNVGSTVKPPTKLSGTRPATAP 876

Query: 623  LSSVTLTA 646
            +S VTL A
Sbjct: 877  VSKVTLGA 884


>BT003276-1|AAO25033.1| 1163|Drosophila melanogaster LD12965p protein.
          Length = 1163

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +2

Query: 284  KSLRST*TMSRVIGGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKD 463
            KSL    +++ V GG+ +   K+H  +K+ +      +      + KT       +    
Sbjct: 758  KSLSEKTSVATVAGGAVVGATKTHSATKAGSTAASAKSKTETLVMKKTTASSTSVYGANK 817

Query: 464  S----PKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVK---KLKSTKPATIP 622
            S    P   R+G ++   I       SSL     + L +     VK   KL  T+PAT P
Sbjct: 818  SAAPRPSTARLG-IKSTSIATKTSTTSSLTGNPRKSLSSNVGSTVKPPTKLSGTRPATAP 876

Query: 623  LSSVTLTA 646
            +S VTL A
Sbjct: 877  VSKVTLGA 884


>AE014297-4842|AAN14301.1| 1185|Drosophila melanogaster CG1483-PB,
            isoform B protein.
          Length = 1185

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +2

Query: 284  KSLRST*TMSRVIGGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKD 463
            KSL    +++ V GG+ +   K+H  +K+ +      +      + KT       +    
Sbjct: 780  KSLSEKTSVATVAGGAVVGATKTHSATKAGSTAASAKSKTETLVMKKTTASSTSVYGANK 839

Query: 464  S----PKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVK---KLKSTKPATIP 622
            S    P   R+G ++   I       SSL     + L +     VK   KL  T+PAT P
Sbjct: 840  SAAPRPSTARLG-IKSTSIATKTSTTSSLTGNPRKSLSSNVGSTVKPPTKLSGTRPATAP 898

Query: 623  LSSVTLTA 646
            +S VTL A
Sbjct: 899  VSKVTLGA 906


>AE014297-4841|AAF57214.1| 1163|Drosophila melanogaster CG1483-PA,
            isoform A protein.
          Length = 1163

 Score = 33.1 bits (72), Expect = 0.34
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +2

Query: 284  KSLRST*TMSRVIGGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKD 463
            KSL    +++ V GG+ +   K+H  +K+ +      +      + KT       +    
Sbjct: 758  KSLSEKTSVATVAGGAVVGATKTHSATKAGSTAASAKSKTETLVMKKTTASSTSVYGANK 817

Query: 464  S----PKNIRVGYLEGDDIVDINKADSSLPTTLLQILRNGDLEKVK---KLKSTKPATIP 622
            S    P   R+G ++   I       SSL     + L +     VK   KL  T+PAT P
Sbjct: 818  SAAPRPSTARLG-IKSTSIATKTSTTSSLTGNPRKSLSSNVGSTVKPPTKLSGTRPATAP 876

Query: 623  LSSVTLTA 646
            +S VTL A
Sbjct: 877  VSKVTLGA 884


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,221,350
Number of Sequences: 53049
Number of extensions: 466079
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)