Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m14
         (564 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015781-1|AAH15781.1|  519|Homo sapiens cAMP responsive element...    30   4.9  
BC014097-1|AAH14097.1|  519|Homo sapiens CREB3L1 protein protein.      30   4.9  
AB063321-1|BAC01278.1|  519|Homo sapiens OASIS protein.                30   4.9  
BC112043-1|AAI12044.1|  392|Homo sapiens RBM35A protein protein.       29   8.5  
BC099916-1|AAH99916.2|  677|Homo sapiens RNA binding motif prote...    29   8.5  
BC067098-1|AAH67098.2|  681|Homo sapiens RNA binding motif prote...    29   8.5  
BC034495-1|AAH34495.2|  870|Homo sapiens radial spoke head 10 ho...    29   8.5  
BC019932-1|AAH19932.1|  656|Homo sapiens RBM35A protein protein.       29   8.5  
AK000178-1|BAA90992.1|  358|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>BC015781-1|AAH15781.1|  519|Homo sapiens cAMP responsive element
           binding protein 3-like 1 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 322 ETMSRANKMLLSRVAVLQSTV------PY-ASSSQATTYLSKAAPRYISLCSCISPMLPR 480
           ET+  AN+ LL ++  LQ+ V      PY  +++Q  T L  AA  ++ +   + P LP 
Sbjct: 337 ETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPE 396

Query: 481 LRNRSDNCSQTP 516
             + S    + P
Sbjct: 397 FSSGSQTVKEDP 408


>BC014097-1|AAH14097.1|  519|Homo sapiens CREB3L1 protein protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 322 ETMSRANKMLLSRVAVLQSTV------PY-ASSSQATTYLSKAAPRYISLCSCISPMLPR 480
           ET+  AN+ LL ++  LQ+ V      PY  +++Q  T L  AA  ++ +   + P LP 
Sbjct: 337 ETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPE 396

Query: 481 LRNRSDNCSQTP 516
             + S    + P
Sbjct: 397 FSSGSQTVKEDP 408


>AB063321-1|BAC01278.1|  519|Homo sapiens OASIS protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 322 ETMSRANKMLLSRVAVLQSTV------PY-ASSSQATTYLSKAAPRYISLCSCISPMLPR 480
           ET+  AN+ LL ++  LQ+ V      PY  +++Q  T L  AA  ++ +   + P LP 
Sbjct: 337 ETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPE 396

Query: 481 LRNRSDNCSQTP 516
             + S    + P
Sbjct: 397 FSSGSQTVKEDP 408


>BC112043-1|AAI12044.1|  392|Homo sapiens RBM35A protein protein.
          Length = 392

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 RPSPAPLLPDIMPPIVPVLP 199
           R S APL+P   PPI+PVLP
Sbjct: 262 RFSSAPLIPLPTPPIIPVLP 281


>BC099916-1|AAH99916.2|  677|Homo sapiens RNA binding motif protein
           35A protein.
          Length = 677

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 RPSPAPLLPDIMPPIVPVLP 199
           R S APL+P   PPI+PVLP
Sbjct: 415 RFSSAPLIPLPTPPIIPVLP 434


>BC067098-1|AAH67098.2|  681|Homo sapiens RNA binding motif protein
           35A protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 RPSPAPLLPDIMPPIVPVLP 199
           R S APL+P   PPI+PVLP
Sbjct: 415 RFSSAPLIPLPTPPIIPVLP 434


>BC034495-1|AAH34495.2|  870|Homo sapiens radial spoke head 10
           homolog B (Chlamydomonas) protein.
          Length = 870

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = -3

Query: 403 GKSWRRALWIAARQHGI-VASYWLGTSFHWRWVTRLRWWTARQNWWTISRFLRARWRR 233
           G  W    W+   + G  +  Y  G  +  +W   +R    R  W T +     RW R
Sbjct: 200 GTCWYEGDWVQNIKKGWGIRCYKSGNIYEGQWEDNMRHGEGRMRWLTTNEEYTGRWER 257


>BC019932-1|AAH19932.1|  656|Homo sapiens RBM35A protein protein.
          Length = 656

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 RPSPAPLLPDIMPPIVPVLP 199
           R S APL+P   PPI+PVLP
Sbjct: 463 RFSSAPLIPLPTPPIIPVLP 482


>AK000178-1|BAA90992.1|  358|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20171 fis, clone COL09761. ).
          Length = 358

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 140 RPSPAPLLPDIMPPIVPVLP 199
           R S APL+P   PPI+PVLP
Sbjct: 255 RFSSAPLIPLPTPPIIPVLP 274


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,660,972
Number of Sequences: 237096
Number of extensions: 1443424
Number of successful extensions: 3917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)