Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m11
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   3.1  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   3.1  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL713992-2|CAD29326.2|  317|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 175 GPMVCYKYE-DCGPPKK---KSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 324
           GP   Y+ + D G  KK   +S DG+ G EEG S KK++  N LKR    E  G
Sbjct: 90  GPGKLYRAKKDDGQEKKGDPQSRDGDEGEEEG-SDKKEKKGNPLKREHGDEGEG 142


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 554 PVEPETSARPDELPS*FCKCADSAAGSAR 468
           PVEP   A P +LPS    C D A GS R
Sbjct: 235 PVEPSDPAPPSKLPSPSKSCTDLAGGSQR 263


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 DCGPPKKKSADGNSGAEEGGSKKKDENENQLKRTKSR 312
           DCGPP    +DG  G+  G   K D+ E  L R   R
Sbjct: 233 DCGPPGAPGSDGKPGSPGG---KGDDGERPLGRPGPR 266


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 DCGPPKKKSADGNSGAEEGGSKKKDENENQLKRTKSR 312
           DCGPP    +DG  G+  G   K D+ E  L R   R
Sbjct: 233 DCGPPGAPGSDGKPGSPGG---KGDDGERPLGRPGPR 266


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 217 KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 324
           KK+  +GN G +    +   ENE Q KR K R+  G
Sbjct: 779 KKRRENGNEGGDNDVCRICCENERQEKREKKRKSSG 814


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 193 KYEDCGPPKKKSADGNSGAEEGG-SKKKDENENQLKRTKSRE 315
           K +D G  KKK A+     + G   KKKD  E + K  + ++
Sbjct: 432 KKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAEEKK 473


>AL713992-2|CAD29326.2|  317|Caenorhabditis elegans Hypothetical
           protein VY10G11R.1 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 202 DCGPPKKKSAD---GNSGAEEGGSK-KKDENENQLKRTKSRELR 321
           +CG  KKKSA+   G + ++ G  K KKDE E      K   L+
Sbjct: 2   NCGGKKKKSANSPVGTNKSKLGAPKEKKDETEQPSASVKGESLK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,155
Number of Sequences: 27780
Number of extensions: 300538
Number of successful extensions: 1086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)