Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m10
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   1.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   2.8  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   3.7  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   3.7  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   4.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   4.9  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   4.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   8.5  

>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 189 GHK*LKFIKSTLRNNRETEMESFQEERSCSNPGVHSLEAF-ERLSVW 326
           GH      KS+ RN+ E E+   Q+ER      + + E+  + L VW
Sbjct: 29  GHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 151 VNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKV 255
           VN+   L K +     N  + N+ Y++T +  WKV
Sbjct: 663 VNTSATLSKDLMSLPINEWVKNVMYIVTHETDWKV 697


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +1

Query: 103 DSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKP 243
           D G+D+ Y   +        DF K  +D+   +  + N+ +V    P
Sbjct: 60  DGGADEPYDSSDSCATFEFADFFKDNLDDFALDGPIININHVNQTSP 106


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 5   HPNNQIYMQTLKMKVKK*SIQNDRKLNARNKELIQGAIKITNCKI-KW--VWSIVK 163
           +P N   + TL       S+QN  KL   NK L+QG I   +  + +W   W++V+
Sbjct: 192 YPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQGTIHWLHGNLHRWSKCWAVVR 247


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 282  PGVHSLEAFERLSVW*QRSLQTKSHAQRSHNTLSAE 389
            P +HS+++FE  S +  RSL  K   +R+++  + E
Sbjct: 906  PHMHSVKSFETESSFGNRSLSPKQENRRTYSDSTIE 941


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 148 LVNSKDFLKKKVDEATSNS-SLSNLRYVITEKPKWKVFKKREAVAI 282
           L NS D + KK+D + ++S +L  + Y +T++PK++     + +A+
Sbjct: 251 LNNSTDAVPKKLDASKASSLNLEKVSY-LTDEPKFRFDFNNDEMAV 295


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 244 KWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKKFS 405
           K    K  + V++P ++ ++  +G     SGP     T  G  I++P+KK + S
Sbjct: 229 KLSASKNSQRVSLPFFSKIELDEGSSF--SGPKISARTSSGKIIYFPKKKNRHS 280


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +1

Query: 301 KPLKGCPCGNS-GPCKQKVTPKGVTIHYPQKKKK 399
           K L  C    S GPC   V+PKGV    P  K +
Sbjct: 24  KILAACSYSLSVGPCSLAVSPKGVNSKSPSLKNE 57


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 139 KMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALK 303
           K+GL    + +K  V + T      +L YV+ + P+W + KK   V+    +A+K
Sbjct: 787 KLGLNIPLNEVKNSVTKVTCACFEPSLDYVVVKIPRWDL-KKFTRVSTQLSSAMK 840


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +3

Query: 231 NRETEMESFQEERSCSNPGVHSLEAFERLSVW*QR-SLQTKSHAQRS--HNTLSAEKKEI 401
           N ++  E F E      PG+  L   + L  W Q  SLQ +    R+  H+  S E   +
Sbjct: 84  NEDSISEHFDEYLGADKPGISFLTRLKTLESWFQSLSLQDRLTTLRTLLHHLPSQEISTL 143

Query: 402 FRIRHKI*TEHTGEN*KRTIRTKSKGHSQCQSDS 503
                     ++G +  +++ +  KG S   S S
Sbjct: 144 LSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSS 177


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 249 ESFQEERSCSNPGVHSL 299
           +SF    SC++P +HSL
Sbjct: 492 KSFASNESCNSPAIHSL 508


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 109 GSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVIT--EKPKWKV 255
           GS+KN  L     L+N KD   K V       S SN+   I+   K +WKV
Sbjct: 637 GSEKNRSLVRDYRLINQKD--PKHVSTHVLVISASNVEREISLLRKFQWKV 685


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 139 KMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFK 261
           K+ L ++   L   V + T+ +   +L YV+T+ P+W + K
Sbjct: 401 KIALGHTLPELPNAVTKTTTANFEPSLDYVVTKIPRWDLSK 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,682
Number of Sequences: 5004
Number of extensions: 45085
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)