Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m09
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.4  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    27   2.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.1  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   7.2  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 42   SFFKAIYFVKYLSTICFVF 98
            S+F  ++F+++L+T C +F
Sbjct: 3083 SYFSCLHFIRFLNTFCLIF 3101


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
 Frame = +1

Query: 313 YKSSKGNDSKRKN-NATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIES----IYD 477
           YK  K  D+K +  N    +   + L+ N      D T Q  +   D+ + ++    +Y 
Sbjct: 162 YKVGKAKDAKYQLLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYI 221

Query: 478 NMNNLVEIVINKVSNVPRILMQLIGLMVPYFRKLN 582
           +    V I +N    +PR   +  GLMV    KL+
Sbjct: 222 HTAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 256


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 544  LIGLMVPYFRKLNRINIRNCKTNVYTIHELRKMIP 648
            L+ L+V + RK NR+   N K+N+  +  L K++P
Sbjct: 1226 LLNLLVSFLRKPNRLVPSNVKSNILVL--LCKLLP 1258


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +1

Query: 319 SSKGNDSKRKNNATLPKEDAQNLDMNALSCCTDATSQASIEYKDTIVIESIYDNMNNLVE 498
           S  G D+  KNN  L   D  N ++  ++   D + +  +E     +I+ +  +  NL  
Sbjct: 655 SLSGGDTNHKNNHPLKMTDLSN-EVETMA-LEDMSEREEVEVD---LIKELITSYFNLTR 709

Query: 499 IVINKVSNVPRILMQLI 549
            +I  +  VP+++M L+
Sbjct: 710 KII--IDQVPKVIMHLL 724


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 306  IYHFENFFLLQQGKDKEIVLS 244
            + H+E FFLL++ KD E +++
Sbjct: 1271 LLHYEQFFLLKKYKDDEHIVN 1291


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 365 GNVALFFLLE--SFPFEDL*K*STILKTFSYYNRARTKKLFCRHFYV 231
           G+V  F L    SFP  DL    T    F Y +R  TK+  C H Y+
Sbjct: 10  GSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYI 56


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 499 IVINKVSN--VPRILMQLIGLMVPYFRKLNRINIRNCKTNVYTIHE 630
           +++N+  N  +    +Q++ L+ P+F + N + +       ++IHE
Sbjct: 80  VLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWLIRRFSIHE 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,668
Number of Sequences: 5004
Number of extensions: 47321
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)