Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    29   0.58 
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   7.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   9.4  
SPCC297.04c |set7||histone lysine methyltransferase Set7 |Schizo...    25   9.4  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 229 YHDLSSKVNPSIFFE---KINFSASGQYTVLLSNGCVKSKNSYSPVNKTSFNDALA 71
           Y +L+   N SI F    KINFS   +Y + L++G +    ++   + ++FN  LA
Sbjct: 156 YTNLTPVFNSSILFSSITKINFSRGYKYRIQLTDGKIWFLYAFPTSSSSTFNLTLA 211


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 276 DAPYHFSSTGKRVGEITLDRLIVPLI 353
           D PYH + + KR  +  L R+ VPL+
Sbjct: 202 DRPYHINLSCKRAYDELLPRIAVPLL 227


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 127 KSKNSYSPVNKTSFNDALAMH 65
           ++K  + PVN   FNDA + H
Sbjct: 134 EAKLKFGPVNSVQFNDAYSTH 154


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 226 HDLSSKVNPSIFFEKINFSASGQYTVLLSNGCVKSKNSYSPVNKTSFND 80
           HD   KVN S  FEK+  ++  +Y     +   K+ NS S +   S  D
Sbjct: 841 HDKGKKVNSSKVFEKMGIASMEKYKPPQESNVTKT-NSDSTLGDDSVLD 888


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   LXKLQAEKMLFVVLLSFY-FNLCIAKASLNDVLFTGEYEFFDLTHPF 140
           L  +   + + + +LSF  FN   +K  LND L T    +   THP+
Sbjct: 620 LPNVDVARHVLLFILSFSPFNRKKSKTILNDTLPTSIPSYTPATHPY 666


>SPCC297.04c |set7||histone lysine methyltransferase Set7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 211 KVNPSIFFEKINFSASGQYTVL 146
           +++P + F K  +   GQYTVL
Sbjct: 35  EISPVLMFSKEEYEQHGQYTVL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,635
Number of Sequences: 5004
Number of extensions: 52625
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)