Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m05
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0649 + 4831209-4831620,4833356-4833400,4833612-4833684,483...    31   0.79 
07_01_0368 + 2739908-2740320,2740437-2740816,2740893-2740977,274...    29   4.2  
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    29   4.2  
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376...    28   5.6  
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222...    28   5.6  

>02_01_0649 +
           4831209-4831620,4833356-4833400,4833612-4833684,
           4833877-4833974,4834160-4834230,4834830-4834955
          Length = 274

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 258 HGGTHIDAPYHFS----STGKRVGEITLDRLIVPLIVVDVSSIVN 380
           H GTH+DAP H +    + G  V ++ LD L  P ++VD     N
Sbjct: 106 HMGTHVDAPGHMNQGHFAAGLDVDKLDLDLLNGPTLLVDTPRNTN 150


>07_01_0368 +
           2739908-2740320,2740437-2740816,2740893-2740977,
           2741053-2741167,2741493-2741615
          Length = 371

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 156 YWPDAEKFIFSKKIEGFTLDDKSWYASYDFTAGEHGGTHIDAPY 287
           Y  DA++F  +KK     LDD+ + A  D TA   G   + AP+
Sbjct: 175 YIVDADEF--AKKFAHSVLDDEEFKAKLDQTADRLGAIAVSAPF 216


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 327 RLFHQHVSQY*RNGKERQYVYHHVL 253
           RL HQHV +Y +   E +Y  HHVL
Sbjct: 538 RLQHQHVVRYYQAWVETEYGQHHVL 562


>11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,
            3765822-3766122,3766283-3766644,3767117-3767713,
            3768323-3769447
          Length = 1153

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 375  QWNSHPLLSGAQSICLRLFHQHVSQY*RNGKERQYVY 265
            Q++S P LSG +SI  + FHQ  S + R     Q  Y
Sbjct: 954  QYDSSPFLSGLKSISSKPFHQVCSHFIRTVAGFQLCY 990


>02_05_1042 + 33718988-33720112,33720709-33721305,33721862-33722223,
            33722383-33722683,33723149-33723271,33723535-33723990,
            33724102-33724602
          Length = 1154

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 375  QWNSHPLLSGAQSICLRLFHQHVSQY*RNGKERQYVY 265
            Q++S P LSG +SI  + FHQ  S + R     Q  Y
Sbjct: 955  QYDSSPFLSGLKSISSKPFHQVCSHFIRTVAGFQLCY 991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,526
Number of Sequences: 37544
Number of extensions: 302198
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)