Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m05
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83237-3|CAB05787.1|  460|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   6.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   6.6  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 320 FTNTFPSTREMVRSVNMCTTMFSCSKI 240
           F N   STR M  SV + TT+ +CSK+
Sbjct: 294 FHNVLYSTRWMYTSVQVSTTVVTCSKV 320


>Z83237-3|CAB05787.1|  460|Caenorhabditis elegans Hypothetical
           protein R06B9.3 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 419 IQMMLIQHKTGIAINNGTHIHYYQGHNQSV*GYFTNTFPSTREMVR 282
           ++  +IQ    IA  NGT  HY  G+   + G    T   T+ +V+
Sbjct: 220 VKAKIIQQCKFIAYRNGTTFHYGGGYETGMSGQLQETKHDTKTVVK 265


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 517 VNPKYCLVSLKYLLHPNLKIITQCFPRLS 431
           VN K C+ S+ YLL  + KI+   FP ++
Sbjct: 706 VNGKRCIDSIDYLLFSSNKIVRGIFPEIN 734


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 517 VNPKYCLVSLKYLLHPNLKIITQCFPRLS 431
           VN K C+ S+ YLL  + KI+   FP ++
Sbjct: 706 VNGKRCIDSIDYLLFSSNKIVRGIFPEIN 734


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 48  SFYFNLCIAKASLNDVLFTGEYEFFDLTHPFDNN 149
           S ++N  + + + N + F   +E  D  HPFD+N
Sbjct: 209 SHHYNPVVTENTKNYIQFDTVFENLDTFHPFDSN 242


>U41012-2|AAV28364.1|  411|Caenorhabditis elegans Hypothetical
           protein C06A6.4b protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 111 YEFFDLTHPFDNNTVYWPDAEKFIFSKKIEGFTLDDKSWYASYD 242
           YEF   T+P D +T+   D E F   K I   T +D  W A  D
Sbjct: 298 YEFMQSTNPADKSTI---DFETFSNFKLISPNTREDPFWAAIDD 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,660
Number of Sequences: 27780
Number of extensions: 293791
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)