Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m05
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 271 ILTLLTISLVLGNVLV 318
           +L ++ + +VLGNVLV
Sbjct: 71  VLAIVNVMVVLGNVLV 86


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 121 KNSYSPVNKTSFNDALAMH 65
           K SYS VNK+  N  L  H
Sbjct: 21  KCSYSCVNKSMLNSHLKSH 39


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 385 SPLTMELTSTTIRGTINLSKVISPTRFPVLE 293
           S +TMEL  TT++  ++ + +I   R  +L+
Sbjct: 132 SLITMELCGTTLQNRLDEAILIKNERICILK 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,632
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)