Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m01
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    28   0.55 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   1.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   1.3  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   2.9  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.9  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   3.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   5.1  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    24   6.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   9.0  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 93  RCPEYEVAIDKLKIYTVGTYRDDAIKHYDRSGFQVTWIRH 212
           RC E+ +    L + TV    DDAI++ +R  F +  +RH
Sbjct: 55  RCIEWLLETRFLGMETVNKMLDDAIQYLERCRFALNDVRH 94


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 138 TVG-TYRDDAIKHYDRSGFQVTWIRHGVNYDDMKFTKPKATKIRREYGKPKDLMKIERMW 314
           TVG T  DD I+   +  FQ   ++HG+N   +++ K K     + +G PK +  +  + 
Sbjct: 6   TVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQYGKGK-----QAFGDPKSVAGLTILG 60

Query: 315 CPYMTPVE 338
             Y   +E
Sbjct: 61  FDYAPEIE 68


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 185  RFPSDLDKARRELR*YEVHEAESHKD 262
            RFP D D  ++++R YEV E+  H+D
Sbjct: 946  RFP-DSDLRKKKVRVYEVFESRYHRD 970


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 111 VAIDKLKIYTVGTYRDDAIKHYDRSGFQVTWI 206
           VA+   KIY +      +I    +SGF V WI
Sbjct: 34  VALQAYKIYDLLKLETSSISDVPKSGFLVKWI 65


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 374 FFLTVPQNLLSHFHGGHVGAPHSFYFHKVLWFSVFSSNLC 255
           +FL    +    F GG VG  +    H+ L   + S++LC
Sbjct: 176 YFLASLTSRSLQFEGGSVGLSNRIITHRELEMVILSTSLC 215


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 244 FVNFISS*FTPCLIQVTWKPDLS 176
           FV F+SS   P L+  T KPD +
Sbjct: 621 FVPFLSSVMPPLLVAATSKPDFT 643


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 194 SDLDKARRELR*YEVHEAESHKD*KRIRKTKGPYENRTNVVPLHDPRGNV 343
           +D+D + R    Y+       +D   I   + PY +  ++ PLH P+ ++
Sbjct: 101 TDIDSSERIRLVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDI 150


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 347 LSHFHGGHVGAPHSFYFHKVLWFSVFSSNL 258
           LSHFH  H G     + H  ++ S  + NL
Sbjct: 213 LSHFHSDHYGGLTPKWKHGPIYCSEVTGNL 242


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 192 GNRICRNVLSRHLCT-CLLYKSLICRWP 112
           G+R+C+ +L   +CT C + +SL  + P
Sbjct: 498 GDRVCQIILYSSICTSCSINESLKTKLP 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,053
Number of Sequences: 5004
Number of extensions: 26781
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)