Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte14m01
         (376 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816...    29   0.90 
03_02_0607 + 9813510-9813628,9813724-9813898,9813993-9814058,981...    29   1.6  
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213...    28   2.1  
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    28   2.7  
07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    26   8.4  

>04_03_0092 +
           11079185-11079589,11081319-11081409,11081507-11081612,
           11081694-11081976,11082062-11082210,11083582-11083735,
           11083837-11084793
          Length = 714

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 150 YRDDAIKHYDRSGFQVTWIRHG-VNYDDMKFTKPKATKIR 266
           + +DA+  Y+  G+   W+++G   YDD++    +A  ++
Sbjct: 249 FTEDALARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVK 288


>03_02_0607 +
           9813510-9813628,9813724-9813898,9813993-9814058,
           9815415-9815463,9815797-9815882,9815969-9816048,
           9816144-9816246,9816364-9816422,9816509-9816524
          Length = 250

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 171 HYDRSGFQVTWIRHGVNYDDMKFTK 245
           H +RSGF+  W R+ + +D+  FT+
Sbjct: 169 HKERSGFEGPWTRNPLQFDNSYFTE 193


>05_07_0280 -
           28920864-28920971,28921076-28921175,28921267-28921394,
           28922013-28922180,28922280-28922395,28922584-28922736,
           28922904-28923047,28923401-28924133
          Length = 549

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 176 RQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPYENRTNV 313
           R++  P DLD  RRE+  + +H    H++   I + +G YE+R +V
Sbjct: 124 RKLARPDDLDDVRREV--HIMHHLTGHRN---IVELRGAYEDRHSV 164


>11_06_0557 - 24955837-24956214,24957225-24957395,24957576-24957635,
            24958419-24958623,24958710-24958953,24959103-24959394,
            24959734-24960828,24960915-24961409,24961665-24961823,
            24961893-24962387
          Length = 1197

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +2

Query: 167  KTLRQIRFPSDLDKARRELR*YEVHEAESHKD*KRIRKTKGPYENRTNVVPLHDPRGNVT 346
            K L+  ++   +D  + +   YE HE+      ++ ++ K   E+  +++ +H   G+  
Sbjct: 1012 KVLQDFQWNLSVDNLKSQ---YEHHESTEFGSEEKNKRGKHRLESALDILKVHGVIGSNE 1068

Query: 347  INSEELL 367
            +NSEE L
Sbjct: 1069 VNSEEAL 1075


>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 199 VTWKPDLS*CFIASSLYVPTV*IFNLSMATSYSGH 95
           V W PD    F   S Y   V + N++ ++S SGH
Sbjct: 347 VAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGH 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,718
Number of Sequences: 37544
Number of extensions: 165343
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)